CV887115

Overview
NameCV887115
Unique NameCV887115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBD6_MOUSE (Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = -3
Query:  196 KGEMGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQL 450
            +G   L E FE+ A   + L +  + E  L LY  +KQ  VG  NT +P  F+   + KW+AWKA+   S  +AM +YI  VK+L
Sbjct:   37 EGTRSLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKL 121          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: ACBD5_PONAB (Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  190 QEEFEEHAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE 432
            +  FE   +  ++LP++     TNE  L  Y  YKQAT GP   +RPG ++   R KWDAW ++   +KEEAMS Y+ ++K++ E
Sbjct:   44 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMSAYVEEMKKIIE 128          
BLAST of CV887115 vs. ExPASy Swiss-Prot
Match: DBIL5_BOVIN (Diazepam-binding inhibitor-like 5 OS=Bos taurus GN=DBIL5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  181 QEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTNRPGMFNMRDRAKWDAWKAVEGKSKEEAMSDYITKVKQLQE-EAG 432
            Q EFE      K L    +++ KL++Y  YKQAT G  N   P   +++ +AKW+AW   +G SK +AM  YI KV++L++ EAG
Sbjct:    3 QVEFEMACAAIKQLKGPVSDQEKLLVYSYYKQATQGDCNIPAPPATDLKAKAKWEAWNENKGMSKMDAMRIYIAKVEELKKNEAG 87          
The following BLAST results are available for this feature:
BLAST of CV887115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ACBD6_MOUSE4.168e-1138.82Acyl-CoA-binding domain-containing protein 6 OS=Mu... [more]
ACBD5_PONAB4.168e-1140.00Acyl-CoA-binding domain-containing protein 5 OS=Po... [more]
DBIL5_BOVIN9.285e-1141.18Diazepam-binding inhibitor-like 5 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887115 ID=CV887115; Name=CV887115; organism=Citrus sinensis; type=EST; length=500bp
AATCATTTCAATGGACTTTAACCAAAGTACATATCATACATAATTTAAAC
AGAGACATAATTCAGATGTAACATCAATAGAACCAGTTTGCAAACAGCTT
AAACCTTTTTCAACTTATTTTGACTTCTCCGAATCATGAGATTTGGAAGA
TAAGCATACAGCGGAAGGTCAGGCAGAAACACCAGCTTCCTCCTGCAACT
GCTTTACCTTGGTAATGTAGTCACTCATTGCTTCCTCCTTAGATTTCCCT
TCGACAGCCTTCCATGCATCCCACTTAGCTCTGTCCCTCATGTTAAACAT
TCCAGGTCTGTTTGTGTTTACTGGTCCAACAGTGGCTTGCTTGTAGAGAC
CATAAAGGATAAGCTTGTTTTCGTTTGTTGTCGACTCTGGCAGGGTCTTT
GCTTTCTCAGCATGCTCCTCAAATTCCTCCTGCAAACCCATTTCCCCCTT
TCTTTTGTTTTTCTCTGAGATTTGAGAATTGAGATGTGATGTGCTTCGAA
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