CV887103

Overview
NameCV887103
Unique NameCV887103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_SALTI (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.013e-38
Identity = 88/193 (45.60%), Postives = 120/193 (62.18%), Query Frame = 3
Query:  273 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +     ++LAGDH+Y+ DY R +  H E  A  TVA +P+  K ATAFG+M +DE  +II+F
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRCYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIKEATAFGVMAVDENDKIIDF 192          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.013e-38
Identity = 87/193 (45.08%), Postives = 119/193 (61.66%), Query Frame = 3
Query:  273 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +     ++LAGDH+Y+ DY R +  H E  A  TV  +P+  K ATAFG+M +DE  +II+F
Sbjct:    2 VSLEKNDRVMLARQLPLESVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVVCMPVPIKEATAFGVMAVDESDKIIDF 192          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.324e-38
Identity = 81/179 (45.25%), Postives = 116/179 (64.80%), Query Frame = 3
Query:  318 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            +R  L +I+ GG G RL  LT  R KPAVP G  +RLID P+SNC+NS I +I VLTQ+ + SL +H+ R +    G +    FVE++ AQQ  + P W+ GTADAV Q + + + HN    LVLAGDH+Y+MDY   I  H E+ A +TV  + +  KRA+AFG+M ++E+ +++ F+
Sbjct:   14 TRDTLALIMAGGRGGRLSNLTDWRTKPAVPFGGKFRLIDFPLSNCINSGIRRIEVLTQYKAHSLIQHIQRGWGFLRGEFGE--FVELVPAQQRMDKPLWYAGTADAVYQNIDIIKAHNPSYVLVLAGDHVYKMDYGGMIARHAESGAAMTVGCVEVPRKRASAFGVMSVNEERQVLAFN 190          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_THET8 (Glucose-1-phosphate adenylyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-38
Identity = 81/178 (45.51%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  327 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ---SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VLG+IL GG G+RLYPLT KRAKPAVP GA YR+ID  ++N +NS I  IYVLTQ+ + SL  H+ R +    G +  + F+ ++ AQ        P W++GTADA+ Q L L   H      V  GDH+++M+    ++ H +T ADIT+AA P+    AT FG++++DE+ RI EF
Sbjct:    6 VLGMILAGGQGSRLYPLTAKRAKPAVPFGAKYRIIDFVLNNFVNSGIYAIYVLTQYKAQSLTEHIQRYW--RFGAFLEDHFILLVPAQMYRYEELGPVWYRGTADAIYQNLHLVHNHAPKAVAVFGGDHIFKMNIRHMVEYHYDTRADITIAAYPVPVAEATRFGVLQVDEEWRITEF 181          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_THET2 (Glucose-1-phosphate adenylyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-38
Identity = 81/178 (45.51%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  327 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ---SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VLG+IL GG G+RLYPLT KRAKPAVP GA YR+ID  ++N +NS I  IYVLTQ+ + SL  H+ R +    G +  + F+ ++ AQ        P W++GTADA+ Q L L   H      V  GDH+++M+    ++ H +T ADIT+AA P+    AT FG++++DE+ RI EF
Sbjct:    6 VLGMILAGGQGSRLYPLTAKRAKPAVPFGAKYRIIDFVLNNFVNSGIYAIYVLTQYKAQSLTEHIQRYW--RFGAFLEDHFILLVPAQMYRYEELGPVWYRGTADAIYQNLHLVHNHAPKAVAVFGGDHIFKMNIRHMVEYHYDTRADITIAAYPVPVAEATRFGVLQVDEEWRITEF 181          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_THECA (Glucose-1-phosphate adenylyltransferase OS=Thermus caldophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-38
Identity = 81/178 (45.51%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  327 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ---SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VLG+IL GG G+RLYPLT KRAKPAVP GA YR+ID  ++N +NS I  IYVLTQ+ + SL  H+ R +    G +  + F+ ++ AQ        P W++GTADA+ Q L L   H      V  GDH+++M+    ++ H +T ADIT+AA P+    AT FG++++DE+ RI EF
Sbjct:    6 VLGMILAGGQGSRLYPLTAKRAKPAVPFGAKYRIIDFVLNNFVNSGIYAIYVLTQYKAQSLTEHIQRYW--RFGAFLEDHFILLVPAQMYRYEELGPVWYRGTADAIYQNLHLVHNHAPKAVAVFGGDHIFKMNIRHMVEYHYDTRADITIAAYPVPVAEATRFGVLQVDEEWRITEF 181          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.949e-38
Identity = 83/180 (46.11%), Postives = 111/180 (61.67%), Query Frame = 3
Query:  312 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            +  R+ L I+L GG GTRL PLT KR KPAV  G  YR+ID  +SNCLNS I +I V+TQ+ + SL RHL R ++   G +    F+++  AQQ  E  +W++GTADAV Q L +         +VLAGDH+Y+MDY R I  H E+ AD TV  + +    A AFG+M +DE  R+  F
Sbjct:    9 DLQRTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGWSFLRGEFGE--FIDLWPAQQRVEGAHWYRGTADAVFQNLDIIRSIRPKYVVVLAGDHIYKMDYTRMIADHAESGADCTVGCIEVPRMDAVAFGVMHVDENRRVTGF 186          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.851e-38
Identity = 83/181 (45.86%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  312 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            + +R  L ++L GG G+RL  LTK RAKPAVP G  YR+ID  +SNC+NS I KI VLTQ+ S SL RH+ RA+  +   Y+   FVE+L AQQ  +   W++GTADA+ Q L +   H     LVL GDH+Y MDY + +  H E+ AD+T+  + +    AT FG+M +DE  +I +F+
Sbjct:   12 DLTRKTLALVLAGGEGSRLKDLTKWRAKPAVPFGGKYRIIDFVLSNCVNSGIRKIGVLTQYKSHSLIRHVQRAW--SFMRYEVGEFVELLPAQQRVDK-GWYKGTADALYQNLDIMRRHTPDYVLVLGGDHIYSMDYSKMLYEHAESGADVTIGCIEVPRMEATGFGVMSVDECFKITKFT 189          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.030e-38
Identity = 78/177 (44.07%), Postives = 118/177 (66.67%), Query Frame = 3
Query:  321 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            R  + +IL GG G+RL PLT+ RAKPAVP+G  YR+ID  +SNCLNS++ ++ +LTQ+ + SL+RH++ A+ +       E F++V+  QQ  ++ NW+QGTADAV Q ++  E       ++LAGDHLY+M+YE  +  H    AD+TV AL +  + A  FG+M++D   R++EF
Sbjct:   23 RQTVTVILAGGRGSRLEPLTRDRAKPAVPIGGAYRIIDFVLSNCLNSDMRRLLLLTQYKAQSLDRHINVAWRNYFCRELGE-FIDVVPPQQRIDD-NWYQGTADAVYQNIYAIEREAPEYVVILAGDHLYKMNYESMVNFHHRKGADVTVGALRVSREEARQFGVMQVDTDNRLVEF 197          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGC_DEIGD (Glucose-1-phosphate adenylyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgC PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.030e-38
Identity = 78/178 (43.82%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  327 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ---SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEF 851
            VLG+IL GG G+RL PLT KR+KPAVP G  YR+ID  ++N +NS +  IYVLTQ+ + SL  H+ R +    G +  + F+ ++ AQ          W++GTADAV Q L L +  N     + +GDH+Y+M+ E  +QAH +  AD+T+AA PM   RA  FG+M++D++ R+ EF
Sbjct:    5 VLGMILAGGQGSRLAPLTLKRSKPAVPFGGKYRIIDFAINNFINSGVFSIYVLTQYKAQSLTEHIQRGW--RFGTFLQDYFITLVPAQMYRYEELGAVWYRGTADAVYQNLHLIDNFNADYVAIFSGDHIYKMNVEHMLQAHMDARADVTIAAYPMPRTRAHQFGVMQVDDRWRVTEF 180          
The following BLAST results are available for this feature:
BLAST of CV887103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_SALTI1.013e-3845.60Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALDC1.013e-3845.08Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC1_ALHEH1.324e-3845.25Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_THET82.949e-3845.51Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]
GLGC_THET22.949e-3845.51Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]
GLGC_THECA2.949e-3845.51Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]
GLGC_BURXL2.949e-3846.11Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_THICR3.851e-3845.86Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_RHOBA5.030e-3844.07Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_DEIGD5.030e-3843.82Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029B07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887103 ID=CV887103; Name=CV887103; organism=Citrus sinensis; type=EST; length=854bp
CTCACTCAGGCTCAGCTCGCTTAACGATTACTGTTAACGTTAACAGATTG
TACCGATTAATGGCGAGTATGGCGTCGATCGGATCGCTCAAAGTTCCGTC
ATCTCCGTCAACTGCAGCAACGTCGTCTAACTCCAACAATCACAGCCGCA
GGAGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGAC
AAGATTTTTTCTAAAGCTGTCACCGGTGATCGGCGAAGGGAGAGGCGTCC
GATCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTT
GCCTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGT
GGAGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGC
TGTTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATT
GTTTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCT
GCGTCCCTGAATCGTCACCTATCGAGGGCGTATGCTAGCAACATGGGTGG
TTACAAGAACGAAGGATTTGTTGAAGTTCTTGCTGCACAGCAGAGTCCAG
AGAATCCCAATTGGTTTCAGGGTACAGCTGATGCTGTGAGGCAGTATTTG
TGGCTGTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGA
TCATTTGTACCGAATGGACTATGAGAGATTTATTCAGGCACACAGAGAAA
CTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGATGAAAAACGGGCT
ACTGCTTTTGGTCTGATGAAGATCGATGAAAAGGGACGCATAATTGAATT
TTCT
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