CV887093

Overview
NameCV887093
Unique NameCV887093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 359.377 bits (921), Expect = 1.628e-98
Identity = 170/251 (67.73%), Postives = 205/251 (81.67%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ + KIT++IKFD GN+ M+TGGRN GRVG + NRE H GSF+ +HI+D+ GH FATRL NVF IGKG KP++SLPKGKG+KLSI EE
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEE 251          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.187e-98
Identity = 170/251 (67.73%), Postives = 204/251 (81.27%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VD KVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+ M+TGGRN GRVG + NRE H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEE 251          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 352.058 bits (902), Expect = 2.599e-96
Identity = 167/251 (66.53%), Postives = 199/251 (79.28%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV  G N GRVG+I NRE H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEE 251          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 345.125 bits (884), Expect = 3.178e-94
Identity = 166/251 (66.14%), Postives = 197/251 (78.49%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  I  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E+ KIT FI F+V N+ M+ GG N GRVG + +RE H GSF+ +H+ D  GH+FATRL NVF IGK ++ +VSLP GKG++ S ++E
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 4.588e-93
Identity = 168/252 (66.67%), Postives = 198/252 (78.57%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKGKGIKLSIIEE 844
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H I  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI  FIKFD G +VMVTGGRN GRVG+I +RE  +G F+ +HI+DAL + F TRL NVF IG +  KPWVSLPKGKGIKLSI EE
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEE 252          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 7.095e-86
Identity = 159/249 (63.86%), Postives = 186/249 (74.70%), Query Frame = 2
Query:   98 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++ T KIT+ +KF+ GN+  VTGGRN GRVGII +RE   G+ + IHI+D+ GH FATR+ NVF IGKG K  VSLP G GI+LSI EE
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEE 250          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.020e-77
Identity = 136/194 (70.10%), Postives = 159/194 (81.96%), Query Frame = 2
Query:  149 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDA 730
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE H GSF+ +H++DA
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.656e-76
Identity = 142/252 (56.35%), Postives = 181/252 (71.83%), Query Frame = 2
Query:   95 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 844
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI  F   + GNV  +  G N GRVGII++ E H+GSF+  H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEE 252          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.311e-49
Identity = 105/252 (41.67%), Postives = 157/252 (62.30%), Query Frame = 2
Query:   92 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKP-WVSLPKGKGIKLSIIEE 844
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  DVVSI KT E+FR+LY+   +F LH I  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  ET+K+ E+I      V+ V+ G+ RGRVG+I N    +G      + D  G+ F+    +   IG+ ++  W++LPK +GI+ S +E+
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250          
BLAST of CV887093 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.227e-37
Identity = 94/238 (39.50%), Postives = 131/238 (55.04%), Query Frame = 2
Query:  107 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREXHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGK 817
            +KHLKR  +P HW +      +  KPS GPH     LPL++I+R+ LK A   RE   I+    VLVD + R +  +P GFMDVVSIP+T + +R+L D +GR  LH I +E A FKLCK+ +    + G   +N +DGR     D   +  D +KL +   +I E I F+  ++ +VTGGR+ G +G IK     + S   T  I+   G  F T    VF IGK  +  +SLP GK
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242          
The following BLAST results are available for this feature:
BLAST of CV887093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_DROME1.628e-9867.7340S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_CARGR6.187e-9867.7340S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4Y2_HUMAN2.599e-9666.5340S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_DICDI3.178e-9466.1440S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_CANAL4.588e-9366.6740S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_CAEEL7.095e-8663.8640S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_HORSE6.020e-7770.1040S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_TETTH6.656e-7656.3540S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU5.311e-4941.6740S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METTH1.227e-3739.5030S ribosomal protein S4e OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029B02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887093 ID=CV887093; Name=CV887093; organism=Citrus sinensis; type=EST; length=901bp
CAGCGCTTGTGAGTGCATTTCACTTCGTTTTTGTTTTGCAGGACTGTGAC
ACGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGA
GGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCT
TGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACA
AATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGTAACCGCTTGAAG
TATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGT
GTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCA
TGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTCTCCTTTAC
GACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAA
GTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCC
CTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAGACCCACTC
ATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAACAAGATCAC
CGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGATGGTGACTGGAGGGA
GAAACAGAGGACGTGTTGGAATCATTAAGAACAGAGAANAGCATAAGGGT
AGCTTTGAAACTATCCACATCCAGGATGCTCTTGGTCATGAGTTTGCAAC
TCGTCTTGGAAATGTGTTCACCATTGGCAAGGGTACAAAGCCATGGGTTT
CTCTTCCCAAGGGCAAGGGTATTAAACTATCCATCATTGAGGAGGCAAGG
AAGAGACAAGCCCTGGCGACTTCAGCAGCCGCCCAATGATGATAAACTTC
A
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