EY720727

Overview
NameEY720727
Unique NameEY720727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MACB_RHORT (Macrolide export ATP-binding/permease protein macB OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=macB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    9 RRGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEAL-MQGKTVIAIAHRLSTIARMDRLVVL 263
            R G+ A  G    +LSGGQ+QR++IAR L+ D  +++ DE T ALDS     +   LEAL  +G+TVI I H     AR +R++ L
Sbjct:  135 RLGMGARSGHFPNQLSGGQQQRVSIARALMNDPRVILADEPTGALDSASGRDVLALLEALHTEGRTVILITHDRDVAARAERVIAL 220          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: AB5C_ARATH (ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   18 LDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            LD+ V E G   S GQRQ +++ R LLK A IL+LDEAT+++D+  +  IQ+ +    +  TV  IAHR+ T+   D ++VL
Sbjct: 1394 LDSPVLENGDNWSVGQRQLVSLGRALLKQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVL 1475          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: AB10C_ARATH (ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAI-QESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            G    +GERGV LSGGQ+QRI +AR L +DA I +LD+  SA+D+   +++ QE +   + GK V+ + H++  +   D ++++
Sbjct:  651 GDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLM 734          
The following BLAST results are available for this feature:
BLAST of EY720727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
MACB_RHORT9.905e-1143.02Macrolide export ATP-binding/permease protein macB... [more]
AB5C_ARATH9.905e-1142.68ABC transporter C family member 5 OS=Arabidopsis t... [more]
AB10C_ARATH9.905e-1138.10ABC transporter C family member 10 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-E06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720727 ID=EY720727; Name=EY720727; organism=Citrus sinensis; type=EST; length=264bp
GCGACGGCCGCCGCGGCCTGGACGCCCACGTCGGCGAGCGCGGCGTCAAG
CTGTCGGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGCGTGCTGCTCAA
GGACGCGCCCATCCTGATCCTGGACGAGGCCACGTCGGCGCTCGACTCCG
AGGTCGAGGCCGCGATCCAGGAGAGCCTGGAGGCGCTGATGCAGGGCAAG
ACCGTCATCGCCATCGCGCACCGCCTGTCCACCATCGCCCGCATGGACCG
GCTGGTGGTGCTGG
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