EY720727

Overview
NameEY720727
Unique NameEY720727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_PSEF5 (Lipid A export ATP-binding/permease protein msbA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.740e-23
Identity = 54/83 (65.06%), Postives = 68/83 (81.93%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  VGE GV LSGGQRQR+AIAR LLK+AP+LILDEATSALD+E E  IQ +L+ +M+G+T + IAHRLSTI + D ++V+
Sbjct:  481 GLDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVM 563          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_MANSM (Lipid A export ATP-binding/permease protein msbA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=msbA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.740e-23
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE G  LSGGQRQR+AIAR LL+D+P+LILDEATSALD+E E AIQ +LE L + +TV+ IAHRLSTI + D ++V+
Sbjct:  472 GLDTVIGENGASLSGGQRQRLAIARALLRDSPVLILDEATSALDTESERAIQAALEELQKDRTVLVIAHRLSTIEKADEILVI 554          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_BORA1 (Lipid A export ATP-binding/permease protein msbA OS=Bordetella avium (strain 197N) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.740e-23
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 3
Query:   12 RGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            +G+   VGE   +LSGGQRQR+AIAR L+K+APILILDEATSALD+E E  +Q SL+ LM+G+T + IAHRLST+   DR++VL
Sbjct:  476 KGIHTPVGENAARLSGGQRQRLAIARALIKNAPILILDEATSALDNESERQVQSSLDRLMRGRTTLVIAHRLSTVQNADRIIVL 559          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_SHISS (Lipid A export ATP-binding/permease protein msbA OS=Shigella sonnei (strain Ss046) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE GV LSGGQRQRIAIAR LL+D+PILILDEATSALD+E E AIQ +L+ L + +T + IAHRLSTI + D +VV+
Sbjct:  469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_SHIFL (Lipid A export ATP-binding/permease protein msbA OS=Shigella flexneri GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE GV LSGGQRQRIAIAR LL+D+PILILDEATSALD+E E AIQ +L+ L + +T + IAHRLSTI + D +VV+
Sbjct:  469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_SHIDS (Lipid A export ATP-binding/permease protein msbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE GV LSGGQRQRIAIAR LL+D+PILILDEATSALD+E E AIQ +L+ L + +T + IAHRLSTI + D +VV+
Sbjct:  469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_SHIBS (Lipid A export ATP-binding/permease protein msbA OS=Shigella boydii serotype 4 (strain Sb227) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE GV LSGGQRQRIAIAR LL+D+PILILDEATSALD+E E AIQ +L+ L + +T + IAHRLSTI + D +VV+
Sbjct:  469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_IDILO (Lipid A export ATP-binding/permease protein msbA OS=Idiomarina loihiensis GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   12 RGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            +GLD  VGE GV LSGGQRQRIAIAR LL+DAPILILDEATSALD+E E  IQ++L  L + +T I IAHRLSTI   D ++V+
Sbjct:  466 KGLDTMVGENGVMLSGGQRQRIAIARALLQDAPILILDEATSALDTESERHIQDALGTLRKNRTAIVIAHRLSTIENADEILVM 549          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_HAHCH (Lipid A export ATP-binding/permease protein msbA OS=Hahella chejuensis (strain KCTC 2396) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   12 RGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            +G D  +GE G +LSGGQRQR+ IAR LLKD+PILILDEATSALD+  E  IQ +LE LM+G+T + +AHRLSTI   D++VV+
Sbjct:  468 QGFDTLLGENGTRLSGGQRQRMVIARALLKDSPILILDEATSALDTHAERNIQSALETLMKGRTTLVVAHRLSTIENADKIVVM 551          
BLAST of EY720727 vs. ExPASy Swiss-Prot
Match: MSBA_ECOUT (Lipid A export ATP-binding/permease protein msbA OS=Escherichia coli (strain UTI89 / UPEC) GN=msbA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.273e-23
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 3
Query:   15 GLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVEAAIQESLEALMQGKTVIAIAHRLSTIARMDRLVVL 263
            GLD  +GE GV LSGGQRQRIAIAR LL+D+PILILDEATSALD+E E AIQ +L+ L + +T + IAHRLSTI + D +VV+
Sbjct:  469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVV 551          
The following BLAST results are available for this feature:
BLAST of EY720727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
MSBA_PSEF51.740e-2365.06Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_MANSM1.740e-2363.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BORA11.740e-2361.90Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHISS2.273e-2366.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIFL2.273e-2366.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIDS2.273e-2366.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_SHIBS2.273e-2366.27Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_IDILO2.273e-2366.67Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_HAHCH2.273e-2361.90Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ECOUT2.273e-2366.27Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-E06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720727 ID=EY720727; Name=EY720727; organism=Citrus sinensis; type=EST; length=264bp
GCGACGGCCGCCGCGGCCTGGACGCCCACGTCGGCGAGCGCGGCGTCAAG
CTGTCGGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGCGTGCTGCTCAA
GGACGCGCCCATCCTGATCCTGGACGAGGCCACGTCGGCGCTCGACTCCG
AGGTCGAGGCCGCGATCCAGGAGAGCCTGGAGGCGCTGATGCAGGGCAAG
ACCGTCATCGCCATCGCGCACCGCCTGTCCACCATCGCCCGCATGGACCG
GCTGGTGGTGCTGG
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