EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.169e-34
Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  101 RDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLY-SQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            R   + VI PLHS + S +Q+ VF +PP G  KII+STNIAET+ITIDDVVYVIDSG+MKEK YD    + +L+ ++VS+A+A QR GRAGR  +G+ + L+ S      L   Q+PEI+R+P+E+LCL++K+L+
Sbjct:  876 RRSNRCVIHPLHSSLSSEEQQAVFVKPPAGVTKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDASKGMESLEDTFVSQANALQRKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILE 1010          

HSP 2 Score: 30.4166 bits (67), Expect = 1.169e-34
Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCL 651
            I PP ++++R + I L+D+G L  DE++  LG  L  L
Sbjct: 1025 IEPPHTDSLRASKIRLRDLGALTPDERLTPLGYHLASL 1062          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.582e-34
Identity = 71/135 (52.59%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  101 RDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLY-SQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            R   + VI PLHS + S +Q+ VF +PP G  KII+STNIAET+ITIDDVVYVIDSG+MKEK YD    + +L+ ++VS+A+A QR GRAGR  +G+ + L+ S      L   Q+PEI+R+P+E+LCL++K+L+
Sbjct:  878 RRSHRCVIHPLHSSLSSEEQQAVFVKPPMGVTKIIISTNIAETSITIDDVVYVIDSGKMKEKRYDAGKGMESLEDTFVSQANALQRKGRAGRVASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILE 1012          

HSP 2 Score: 30.0314 bits (66), Expect = 2.582e-34
Identity = 15/38 (39.47%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCL 651
            I PP  +++R + + L+D+G L  DEK+  LG  L  L
Sbjct: 1027 IEPPHIDSLRASKVRLRDLGALTPDEKLTPLGYHLASL 1064          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.229e-31
Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 2
Query:   47 GXDPLNKRWDLLXXXXFXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            G   + + +D+L       D  ++ +I LHS++ S  Q + F  PP G RKI+L+TNIAET ITI DVV+VID+GR KE  Y   + +S+L  +++SKASA QR GRAGR + G  +RLY++ R  S  ++ VPEI R+P+EELCL +   D
Sbjct:  870 GLADIQQLYDILSSDKRFHDRRRYKLIALHSILSSQDQAEAFILPPAGTRKIVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASALQRQGRAGRVRNGYCFRLYTRERFESFMEYSVPEILRVPLEELCLHIMKCD 1021          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.097e-31
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            ++ +I LHS++ +  Q   F  PPPG RKI+L+TNIAET ITI DVV+VID+GR KE  Y   + +S+L  ++VSKASA QR GRAGR + G  +RLY++ R     D+ VPEI R+P+EELCL +   D
Sbjct:  896 RYQVIALHSVLSTQDQAAAFMFPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCD 1025          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.963e-31
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPNCNI 517
            ++ +I LHS++ +  Q   F  PPPG RKI+L+TNIAET ITI DVV+VID+GR KE  Y   + +S+L  ++VSKASA QR GRAGR + G  +R+Y++ R     D+ VPEI R+P+EELCL +      CN+
Sbjct:  897 RYKVIALHSILSTQDQAAAFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIM----KCNL 1027          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.804e-30
Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVK 493
            ++V++PLHS +    Q KVF   P G RK ILSTNIAET++TID + +V+DSG++KE SYDP   +  LQ  W+S+ASA+QR GRAGR   G+ YRLY++    +   + VPEI+R+ ++ L LQ+K
Sbjct:  409 RWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMK 535          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YG65_SCHPO (Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe GN=SPBC15C4.05 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.707e-29
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = 2
Query:   77 LLXXXXFXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLR-AASLPDFQVPEIKRIPIEELCLQVKL 496
            L+      R+  KF I  LHS + S QQ+ VF  PP GCRKI+LSTNIAET +TI DV  VID+G  +E  Y+   ++S L  ++VSKA+AKQR+GRAGR Q GI Y L+S+ +       +Q PEI R+ ++E+ L+VK+
Sbjct:  922 LIEDMPMFRNHRKFCIYMLHSTLSSAQQQSVFNIPPKGCRKIVLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKANAKQRSGRAGRVQEGICYHLFSKFKHDTQFLSYQTPEILRLNLQEVVLRVKM 1062          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_CAEEL (Probable ATP-dependent RNA helicase A OS=Caenorhabditis elegans GN=rha-1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.397e-28
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            K+ I+PLHS + S +Q+KVF   P G RKII+STNIAET+ITIDDVVYVIDS + KE+ Y   NN+    + W SK +  QR GRAGR +AG  + L S++R  +L D    E+ RIP+ ++ L +KLL
Sbjct:  690 KYEILPLHSQLTSQEQRKVFNHYP-GKRKIIVSTNIAETSITIDDVVYVIDSCKAKERMYTSNNNMVHFATVWASKTNVIQRRGRAGRVRAGYAFHLCSKMRFEALDDHGTAEMLRIPLHQIALTIKLL 817          

HSP 2 Score: 23.8682 bits (50), Expect = 1.397e-28
Identity = 12/49 (24.49%), Postives = 26/49 (53.06%), Query Frame = 1
Query:  520 KILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPPI 666
            + L + + PP  + +  +  VLQ +G L  + ++ +LG+ L  +   P+
Sbjct:  824 EFLGKALQPPPYDMVVESEAVLQAMGALDRNLELTSLGKMLARMPIEPV 872          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.084e-28
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVK 493
            ++PL+S++P+ +Q +VF++PP G R  I++TN+AET++TI  V YV+DSGR KE+ Y+  N V + +  WVSKASA QR+GRAGR   G  YRLYS  +       F  PEI R+P+E + LQ+K
Sbjct:  731 VLPLYSLLPTKEQMRVFQKPPQGSRLCIVATNVAETSLTIPGVRYVVDSGRSKERKYNESNGVQSFEVGWVSKASANQRSGRAGRTGPGHCYRLYSSAVFEHDFEQFSKPEILRMPVESIVLQMK 855          

HSP 2 Score: 21.557 bits (44), Expect = 3.084e-28
Identity = 11/33 (33.33%), Postives = 17/33 (51.52%), Query Frame = 1
Query:  544 PPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            PP    +  AI +LQ +G L   E +   G+K+
Sbjct:  870 PPDRVALSKAIQLLQYLGALDNKEMITEDGKKM 902          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.240e-28
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++ I+PLHS +P  +Q+KVF   P G  KIILSTNIAET+ITI+DVVYVIDS + K K +  +NN++   + W SK + +QR GRAGR + G  + L S+ R   L     PE+ R P+ E+ L +KLL
Sbjct:  677 RYQILPLHSQIPREEQRKVFDPVPSGVTKIILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLL 805          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
DHX57_HUMAN1.169e-3452.59Putative ATP-dependent RNA helicase DHX57 OS=Homo ... [more]
DHX57_MOUSE2.582e-3452.59Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX29_XENLA1.229e-3146.05ATP-dependent RNA helicase DHX29 OS=Xenopus laevis... [more]
DHX29_MOUSE6.097e-3151.54ATP-dependent RNA helicase Dhx29 OS=Mus musculus G... [more]
DHX29_HUMAN7.963e-3149.63ATP-dependent RNA helicase DHX29 OS=Homo sapiens G... [more]
DHX34_MOUSE8.804e-3049.61Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]
YG65_SCHPO5.707e-2948.23Uncharacterized helicase C15C4.05 OS=Schizosacchar... [more]
DHX9_CAEEL1.397e-2851.16Probable ATP-dependent RNA helicase A OS=Caenorhab... [more]
DHR1_YEAST3.084e-2848.80Probable ATP-dependent RNA helicase DHR1 OS=Saccha... [more]
DHX9_BOVIN8.240e-2848.06ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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