EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++ I+PLHS +P  +Q+KVF   P G  K+ILSTNIAET+ITI+DVVYVIDS + K K +  +NN++   + W SK + +QR GRAGR + G  + L S+ R   L     PE+ R P+ E+ L +KLL
Sbjct:  680 RYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLL 808          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++ I+PLHS +P  +Q+KVF   P G  K+ILSTNIAET+ITI+DVVYVIDS + K K +  +NN++   + W SK + +QR GRAGR + G  + L S+ R   L     PE+ R P+ E+ L +KLL
Sbjct:  682 RYQILPLHSQIPREEQRKVFDPVPDGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFDRLETHMTPEMFRTPLHEIALSIKLL 810          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++ I+PLHS +P  +Q+KVF   P G  K+ILSTNIAET+ITI+DVVYVIDS + K K +  +NN++   + W SK + +QR GRAGR + G  + L S+ R   L     PE+ R P+ E+ L +KLL
Sbjct:  680 RYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLL 808          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX37_HUMAN (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 59/127 (46.46%), Postives = 87/127 (68.50%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            ++PL+S++   +Q +VFK PP G R  +++TN+AET++TI  + YV+D G++K++ YD    VS+ + +WVS+ASA QRAGRAGR + G  YRLYS         F  PEI R P+E+L LQ+K L+
Sbjct:  590 VLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTEPGHCYRLYSSAVFGDFEQFPPPEITRRPVEDLILQMKALN 716          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.131e-27
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  116 FVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + I+PLHS +P  +Q+KVF   P G  K+ILSTNIAET+ITI+DVVYVIDS + K K +  +NN++   + W SK + +QR GRAGR + G  + L S+ R   L     PEI R P+ E+ L +KLL
Sbjct:  683 YCILPLHSQIPRDEQRKVFDPVPDGIIKVILSTNIAETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSKARFDKLETHLTPEIFRTPLHEVALSIKLL 810          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YL419_YEAST (Putative ATP-dependent RNA helicase YLR419W OS=Saccharomyces cerevisiae GN=YLR419W PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.341e-27
Identity = 70/152 (46.05%), Postives = 97/152 (63.82%), Query Frame = 2
Query:   47 GXDPLNKRWDLLXXXXFXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            G   +NK  +LL       D   F+++PLHS +    QK+VFK+   G RK+++STNIAET+ITIDD V  ID+GR K   Y+P +N + L  S++SKA  KQR GRAGR + G+ Y+L+S+ L    +    +PEIKRIP+E L L VK +
Sbjct:  872 GVGEINKCCNLLANKSNEAD---FMVLPLHSALTPEDQKRVFKKYH-GKRKVVVSTNIAETSITIDDCVATIDTGRAKSMFYNPKDNTTKLIESFISKAEVKQRRGRAGRVREGLSYKLFSKNLYENDMISMPIPEIKRIPLESLYLSVKAM 1019          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.341e-27
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            D  ++ I+P HS +P  +Q+KVF+  P G  KIILSTNIAET+ITIDD+V+VID  + + K +  +NN+++  + W SK + +QR GRAGR + G  + L S+ R  +L D   PE+ R P+ E+ L +KLL
Sbjct:  681 DTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWASKTNLEQRKGRAGRVRPGFCFTLCSRARFQALEDNLTPEMFRTPLHEMALTIKLL 812          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 60/132 (45.45%), Postives = 92/132 (69.70%), Query Frame = 2
Query:  101 RDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVK 493
            R   K  I+PLH+ + + +Q++VF+    G RKI++STN+AET+ITI DV YV+D+GR+KE  ++P + ++ L   W S+A+ KQR GRAGR +AG  +RLYS+ +    +   Q PE++R+P+E L L+VK
Sbjct: 1050 RGQSKVEILPLHANLSADEQRRVFQPVGAGRRKIVVSTNVAETSITIPDVSYVVDTGRVKETRFEPESGLTRLVECWASRAACKQRRGRAGRVRAGECFRLYSRYVDEKKMAAQQTPEMRRVPLESLFLEVK 1181          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.713e-26
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  167 VFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVK 493
            VF   PPG RK ILSTNIAET++TID + +V+DSG++KE SYDP   +  LQ  W+S+ASA+QR GRAGR   G+ +RLY++    +   + VPEI+R+ ++ L LQ+K
Sbjct:  340 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMK 448          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: KZ_DROME (Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster GN=kz PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 57/127 (44.88%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++PL+S++ S +Q ++F   P GCR  ++STN+AET++TI  + YV+D GR K + YD    VS    ++ SKASA QRAGRAGR  AG  YRLYS  +      DF  P+I++ P+E+L LQ++ +
Sbjct:  619 VLPLYSLLSSEKQNRIFLPVPDGCRLCVVSTNVAETSLTIPHIKYVVDCGRQKTRLYDKLTGVSAFVVTYTSKASADQRAGRAGRISAGHCYRLYSSAVYNDCFEDFSQPDIQKKPVEDLMLQMRCM 745          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
DHX9_PONAB1.406e-2747.29ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_MOUSE1.406e-2747.29ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]
DHX9_HUMAN1.406e-2747.29ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DHX37_HUMAN1.836e-2746.46Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
DHX9_XENLA3.131e-2748.44ATP-dependent RNA helicase A-like protein OS=Xenop... [more]
YL419_YEAST5.341e-2746.05Putative ATP-dependent RNA helicase YLR419W OS=Sac... [more]
MLE_DROME5.341e-2745.45Dosage compensation regulator OS=Drosophila melano... [more]
YUM14_USTMA1.554e-2645.45Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
DHX34_HUMAN7.713e-2651.38Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
KZ_DROME4.999e-2544.88Probable ATP-dependent RNA helicase kurz OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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