EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.090e-24
Identity = 57/131 (43.51%), Postives = 86/131 (65.65%), Query Frame = 2 
Query:  101 RDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQV 490
            +D  KF ++PLH+ + + +Q++ FK      RKII +TNIAET+ITIDDVV VIDSGR+K+  YD   ++ T + +W S+A+ +QR GRAGR + GI Y+LY++      +     PE+ R  + ++CL V
Sbjct:  836 KDGSKFEVLPLHASLNTSEQRRCFKTYTK--RKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETWASRAACQQRRGRAGRVKKGICYKLYTRGFEEKGMLGQTPPEVLRTALSQVCLNV 964

HSP 2 Score: 25.7942 bits (55), Expect = 1.090e-24
Identity = 14/41 (34.15%), Postives = 21/41 (51.22%), Query Frame = 1 
Query:  520 KILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            K +   I+PP   T+  A+  L  +G L + E +  LGE L
Sbjct:  985 KFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYL 1025
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 56/137 (40.88%), Postives = 90/137 (65.69%), Query Frame = 2 
Query:  101 RDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508
            ++  + +I+P++S +PS  Q ++F  PPPG RK++++TNIAE ++TID + YV+D G  K+  Y+P   + +L  + +S+ASAKQRAGRAGR   G  YRLY++    + +P   +PEI+RI +    L +K +  N
Sbjct:  752 KNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGIN 888
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 2 
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVK 493
            ++PL+S++ +  Q KVF   P G R  I++TN+AET+ITI ++ YV+D G+ KE+ Y+   +V   +  W+SKA+A QRAGRAGR   G  YRLYS  +  +S P   +PEI R P+E + LQ+K
Sbjct:  704 VLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRAGRAGRTGPGHCYRLYSSAVFDSSFPLHSLPEILRTPVESIVLQMK 828
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 55/130 (42.31%), Postives = 88/130 (67.69%), Query Frame = 2 
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + +++P+++ +PS  Q ++F+  PPG RK++++TNIAET++TI+ ++YV+D G  K+KSY+P   + +L  +  SKASA QRAGRAGR  AG  +RLY+       L +  VPEI+R  +  + L +K L
Sbjct:  644 ELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSL 773
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.608e-23
Identity = 55/130 (42.31%), Postives = 88/130 (67.69%), Query Frame = 2 
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + +++P+++ +PS  Q ++F+  PPG RK++++TNIAET++TI+ ++YV+D G  K+KSY+P   + +L  +  SKASA QRAGRAGR  AG  +RLY+       L +  VPEI+R  +  + L +K L
Sbjct:  641 ELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSL 770
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.990e-23
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 2 
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGC------RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            IIPL+S +P  QQ+++F+ PPP        RK+++STNIAET++TID VV+VID G  K+K Y+P   V +L  + +SKASA+QRAGRAGR + G  +RLY++      + D   PEI R  +  + LQ+K L
Sbjct:  385 IIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL 517

HSP 2 Score: 21.9422 bits (45), Expect = 1.990e-23
Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1 
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            ++PP  ET+  A+ +L  +  L  D  +  LG  +
Sbjct:  528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMM 562
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.990e-23
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 2 
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGC------RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            IIPL+S +P  QQ+++F+ PPP        RK+++STNIAET++TID VV+VID G  K+K Y+P   V +L  + +SKASA+QRAGRAGR + G  +RLY++      + D   PEI R  +  + LQ+K L
Sbjct:  385 IIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL 517

HSP 2 Score: 21.9422 bits (45), Expect = 1.990e-23
Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1 
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            ++PP  ET+  A+ +L  +  L  D  +  LG  +
Sbjct:  528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMM 562
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.990e-23
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 2 
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGC------RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            IIPL+S +P  QQ+++F+ PPP        RK+++STNIAET++TID VV+VID G  K+K Y+P   V +L  + +SKASA+QRAGRAGR + G  +RLY++      + D   PEI R  +  + LQ+K L
Sbjct:  385 IIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKL 517

HSP 2 Score: 21.9422 bits (45), Expect = 1.990e-23
Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1 
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            ++PP  ET+  A+ +L  +  L  D  +  LG  +
Sbjct:  528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMM 562
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: TDRD9_HUMAN (Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.100e-23
Identity = 62/128 (48.44%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRL-YSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            + PLHS V   +Q  VF  P PG RKIILSTNIAE+++T+ DV YVID    +    D   N  +L+ SW SK S  QR GRAGR   G  YRL +      S+PD  VPE+ R P+    L+VKLLD
Sbjct:  261 VYPLHSSVALEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSRGYCYRLVHKDFWDNSIPDHVVPEMLRCPLGSTILKVKLLD 388
[Close]
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.100e-23
Identity = 57/137 (41.61%), Postives = 90/137 (65.69%), Query Frame = 2 
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ--LRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            D  + +I+P++  +PS  Q ++F   P G RK++++TNIAET++TID + YV+D G +K+K Y+P + + +L  + +S+A+AKQR+GRAGR   G  YRLY++   R   LP   VPEI+R  +    LQ+K +  N
Sbjct:  778 DVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKCYRLYTERAFRDEMLPT-PVPEIQRTNLASTLLQLKAMGIN 913
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UCP12_SCHPO1.090e-2443.51Putative ATP-dependent RNA helicase ucp12 OS=Schiz... [more]
DHX8_ARATH1.900e-2440.88Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
YK16_SCHPO4.232e-2445.60Putative ATP-dependent RNA helicase PB1A10.06c OS=... [more]
DHX16_PANTR1.608e-2342.31Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN1.608e-2342.31Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_PONAB1.990e-2346.62Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_MOUSE1.990e-2346.62Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_HUMAN1.990e-2346.62Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
TDRD9_HUMAN2.100e-2348.44Putative ATP-dependent RNA helicase TDRD9 OS=Homo ... [more]
MOG5_CAEEL2.100e-2341.61Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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