EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.374e-23
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++P+++ +PS +Q KVF+R     RK+I++TN+AET+ITI  +VYVID G +K ++Y+P   +  L    VS+ASA QRAGR GR ++G  YRLY++     LP   VPE++R  +  + LQ+K L
Sbjct:  312 VLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKAL 437          

HSP 2 Score: 20.7866 bits (42), Expect = 3.374e-23
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLD 612
            ++PP ++++  A+ +L  +GGL  D
Sbjct:  448 MSPPPAQSMVQALELLYALGGLDKD 472          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.376e-23
Identity = 56/126 (44.44%), Postives = 85/126 (67.46%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++P+++ +PS +Q KVF+R     RK+I++TN+AET+ITI  +VYVID G +K ++Y+P   +  L    VS+ASA QRAGR GR ++G  YRLY++     LP   VPE++R  +  + LQ+K L
Sbjct:  312 VLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKAL 437          

HSP 2 Score: 20.7866 bits (42), Expect = 3.376e-23
Identity = 8/25 (32.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLD 612
            ++PP ++++  A+ +L  +GGL  D
Sbjct:  448 MSPPPAQSMVQALELLYALGGLDKD 472          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: TDRD9_RAT (Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.583e-23
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRL-YSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            + PLHS V   +Q  VF  P PG RKIILSTNIAE+++T+ DV YVID    +    D   N  +L+ SW SK S  QR GRAGR   G  YRL +     +++PD  VPE+ R P+    L+VKLLD
Sbjct:  261 VYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIHRDFWDSAIPDHVVPEMLRCPLGSTVLKVKLLD 388          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.583e-23
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490
            +++PL++ +P  QQ +VF+  P G RK+I+STNIAET+ITI  + YV+D+G +K K Y+P + +  L    VSK  A QR GRAGR  +GI YRLY++          VPEI+R  +  + LQ+
Sbjct:  323 LVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQL 446          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.679e-23
Identity = 54/131 (41.22%), Postives = 88/131 (67.18%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508
            +I+P++S +PS  Q K+F+  PPG RK++++TNIAET++TID + YVID G  K+K ++P N + +L  + +S+A+A+QR+GRAGR   G  YRLY++    + +    +PEI+R  +    L +K +  N
Sbjct:  751 IILPVYSALPSEMQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRTGPGKCYRLYTESAFKNEMLASSIPEIQRTNLGNTVLTMKAMGIN 881          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: TDRD9_MOUSE (Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            + PLHS V   +Q  VF  P PG RKIILSTNIAE+++T+ DV YVID    +    D   N  +L+ SW SK S  QR GRAGR   G  YRL  +    +++PD  VPE+ R P+    L+VKLLD
Sbjct:  260 VYPLHSSVTLEEQNNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCDQRKGRAGRVSKGYCYRLIPRDFWDSAIPDHVVPEMLRCPLGSTILKVKLLD 387          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23
Identity = 55/124 (44.35%), Postives = 80/124 (64.52%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490
            +++PL++ +P  QQ +VF+  P G RK+I+STNIAET+ITI  + YV+D+G +K K Y+P + +  L    VSK  A QR GRAGR  +GI YRLY++          VPEI+R  +  + LQ+
Sbjct:  314 LVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQL 437          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            D  + +I+P++S +PS  Q ++F   PPG RK++++TNIAET++TID + YV+D G +K+K Y+    +  L  + +S+A AKQRAGRAGR   G  YRLY++      +    VPEI+R  +    L +K +  N
Sbjct:  827 DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGIN 962          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            D  + +I+P++S +PS  Q ++F   PPG RK++++TNIAET++TID + YV+D G +K+K Y+    +  L  + +S+A AKQRAGRAGR   G  YRLY++      +    VPEI+R  +    L +K +  N
Sbjct:  803 DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGIN 938          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.033e-22
Identity = 56/134 (41.79%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLY--SQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            + VI+P++S +PS  Q ++F+  PPG RK++++TNIAET++TID + YV+D G +K+  +DP   + +L  + +S+A A+QR+GRAGR   G  YRLY  S  R   LP   +PEI+R  +    L +K +  N
Sbjct:  752 ELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRTGPGKCYRLYTESAYRNEMLPS-PIPEIQRQNLSHTILMLKAMGIN 884          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
DHX35_PONAB3.374e-2344.44Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX35_HUMAN3.376e-2344.44Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
TDRD9_RAT3.583e-2347.66Putative ATP-dependent RNA helicase TDRD9 OS=Rattu... [more]
DHX33_HUMAN3.583e-2344.35Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DHX8_DICDI4.679e-2341.22ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
TDRD9_MOUSE6.111e-2347.66Putative ATP-dependent RNA helicase TDRD9 OS=Mus m... [more]
DHX33_MOUSE6.111e-2344.35Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
DHX8_MOUSE7.982e-2340.44ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN7.982e-2340.44ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
PRP22_SCHPO3.033e-2241.79Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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