EY665652
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.729e-22 Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 2 Query: 125 IPLHSMVPSVQQKKVFKRPPPGC------RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499 IPL+S +P Q+++F+ PP RK+++STNIAET++TID VV+VID G K+K Y+P V +L S +SKASA+QR GRAGR + G +RLY++ S + D PEI R + + LQ+K L Sbjct: 154 IPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGKCFRLYTEKAYDSEMQDNTYPEILRSNLGTVVLQLKKL 285 HSP 2 Score: 22.3274 bits (46), Expect = 4.729e-22 Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1 Query: 538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642 ++PP ET+ A+ +L +G L + LG + Sbjct: 296 MDPPAPETLMRALELLNYLGALDDSGDLTRLGSMM 330
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22 Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 ++P + +P+ +Q K F P G RK++++TNIAE +ITI + YVID+G +K ++ N V TL VSKASA+QRAGRAGR + G YRLY + + VPEI+R + LQ+K L Sbjct: 331 VVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYRLYPESEFERFAEGTVPEIQRCQMASTILQLKAL 456
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22 Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 2 Query: 113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQV-PEIKRIPIEELCLQVKLLDPN 508 + ++ P+++ +PS Q K+F PPG RK++L+TNIAET+ITID V +VIDSG +K+ Y+P + +L S S+ASA QRAGRAGR G +RLY++ + D PEI+R + + L +K L N Sbjct: 660 EIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGIN 792
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.966e-21 Identity = 50/128 (39.06%), Postives = 85/128 (66.41%), Query Frame = 2 Query: 119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 +I+P + + + QQ+++F PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P + L+ +SK+ A QR+GRAGR +G +R+YS + + +PD +PEIKR + + L +K L Sbjct: 314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCL 441
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.272e-21 Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPP-------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499 ++PL+S +P Q+K+F P P RKI++STNIAET++TID +VYVID G K+K Y+P V +L S +SKASA QR+GRAGR + G +RLY++ + L PEI R + L +K L Sbjct: 315 VVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKL 448 HSP 2 Score: 24.2534 bits (51), Expect = 2.272e-21 Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 1 Query: 538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGE 636 ++PP ET+ A+ VL +G L + + GE Sbjct: 459 MDPPAPETLMRALEVLNYLGALDDEGNLTKTGE 491
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21 Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2 Query: 104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLR-AASLPDFQVPEIKRIPIEELCLQVKLL 499 D + I+P++S +P+ Q K+F PG RK++++TNIAET++T+ + YV+D+G K K Y+ + TLQ + +S+A+A QRAGRAGR GI YRLY+++ + + +PEI+R + L +K L Sbjct: 729 DAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSL 861
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.955e-21 Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 2 Query: 125 IPLHSMVPSVQQKKVFKRPPPG------CRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499 IPL+S +P Q+++F+ PP RK ++STNIAET++TID VV+VID G K+K Y+P V +L +SKASA QRAGRAGR + G +RLY++ S + D PEI R + + LQ+K L Sbjct: 330 IPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKL 461 HSP 2 Score: 20.7866 bits (42), Expect = 2.955e-21 Identity = 9/32 (28.12%), Postives = 18/32 (56.25%), Query Frame = 1 Query: 538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLG 633 ++PP ET+ A+ +L + + D ++ LG Sbjct: 472 MDPPAPETLMRALELLNYLQAINDDGELTELG 503
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 4.380e-21 Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2 Query: 119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499 +I+P + + + QQ+++F PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P + L+ +SK+ A QR+GRAGR +G +R+YS+ +PD +PEIKR + + L +K L Sbjct: 314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21 Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2 Query: 119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499 +I+P + + + QQ+++F PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P + L+ +SK+ A QR+GRAGR +G +R+YS+ +PD +PEIKR + + L +K L Sbjct: 314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21 Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2 Query: 119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499 +I+P + + + QQ+++F PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P + L+ +SK+ A QR+GRAGR +G +R+YS+ +PD +PEIKR + + L +K L Sbjct: 314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441 The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bpback to top |