EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_STRPU (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.729e-22
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 2
Query:  125 IPLHSMVPSVQQKKVFKRPPPGC------RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499
            IPL+S +P   Q+++F+  PP        RK+++STNIAET++TID VV+VID G  K+K Y+P   V +L  S +SKASA+QR GRAGR + G  +RLY++    S + D   PEI R  +  + LQ+K L
Sbjct:  154 IPLYSTLPPAMQQRIFEHAPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRTRPGKCFRLYTEKAYDSEMQDNTYPEILRSNLGTVVLQLKKL 285          

HSP 2 Score: 22.3274 bits (46), Expect = 4.729e-22
Identity = 10/35 (28.57%), Postives = 18/35 (51.43%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKL 642
            ++PP  ET+  A+ +L  +G L     +  LG  +
Sbjct:  296 MDPPAPETLMRALELLNYLGALDDSGDLTRLGSMM 330          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.173e-22
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++P +  +P+ +Q K F   P G RK++++TNIAE +ITI  + YVID+G +K ++    N V TL    VSKASA+QRAGRAGR + G  YRLY +       +  VPEI+R  +    LQ+K L
Sbjct:  331 VVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYRLYPESEFERFAEGTVPEIQRCQMASTILQLKAL 456          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.757e-22
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQV-PEIKRIPIEELCLQVKLLDPN 508
            + ++ P+++ +PS  Q K+F   PPG RK++L+TNIAET+ITID V +VIDSG +K+  Y+P   + +L S   S+ASA QRAGRAGR   G  +RLY++    +  D    PEI+R  +  + L +K L  N
Sbjct:  660 EIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGIN 792          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.966e-21
Identity = 50/128 (39.06%), Postives = 85/128 (66.41%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            +I+P +  + + QQ+++F  PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P   +  L+   +SK+ A QR+GRAGR  +G  +R+YS +  +  +PD  +PEIKR  +  + L +K L
Sbjct:  314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCL 441          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.272e-21
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPP-------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499
            ++PL+S +P   Q+K+F   P       P  RKI++STNIAET++TID +VYVID G  K+K Y+P   V +L  S +SKASA QR+GRAGR + G  +RLY++    + L     PEI R  +    L +K L
Sbjct:  315 VVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKL 448          

HSP 2 Score: 24.2534 bits (51), Expect = 2.272e-21
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGE 636
            ++PP  ET+  A+ VL  +G L  +  +   GE
Sbjct:  459 MDPPAPETLMRALEVLNYLGALDDEGNLTKTGE 491          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.568e-21
Identity = 53/133 (39.85%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLR-AASLPDFQVPEIKRIPIEELCLQVKLL 499
            D  +  I+P++S +P+  Q K+F    PG RK++++TNIAET++T+  + YV+D+G  K K Y+    + TLQ + +S+A+A QRAGRAGR   GI YRLY+++     + +  +PEI+R  +    L +K L
Sbjct:  729 DAPRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSL 861          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.955e-21
Identity = 60/132 (45.45%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  125 IPLHSMVPSVQQKKVFKRPPPG------CRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499
            IPL+S +P   Q+++F+  PP        RK ++STNIAET++TID VV+VID G  K+K Y+P   V +L    +SKASA QRAGRAGR + G  +RLY++    S + D   PEI R  +  + LQ+K L
Sbjct:  330 IPLYSTLPPAAQQRIFEPAPPNRPNGAISRKCVISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTKPGKCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKL 461          

HSP 2 Score: 20.7866 bits (42), Expect = 2.955e-21
Identity = 9/32 (28.12%), Postives = 18/32 (56.25%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLG 633
            ++PP  ET+  A+ +L  +  +  D ++  LG
Sbjct:  472 MDPPAPETLMRALELLNYLQAINDDGELTELG 503          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.380e-21
Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            +I+P +  + + QQ+++F  PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P   +  L+   +SK+ A QR+GRAGR  +G  +R+YS+      +PD  +PEIKR  +  + L +K L
Sbjct:  314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTSSGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            +I+P +  + + QQ+++F  PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P   +  L+   +SK+ A QR+GRAGR  +G  +R+YS+      +PD  +PEIKR  +  + L +K L
Sbjct:  314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.720e-21
Identity = 50/128 (39.06%), Postives = 84/128 (65.62%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            +I+P +  + + QQ+++F  PPPG RK ++STNI+ T++TID + YV+D G +K+ +++P   +  L+   +SK+ A QR+GRAGR  +G  +R+YS+      +PD  +PEIKR  +  + L +K L
Sbjct:  314 LILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
DHX15_STRPU4.729e-2245.45Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX35_CAEEL5.173e-2243.65Probable ATP-dependent RNA helicase DHX35 homolog ... [more]
CDC28_SCHPO6.757e-2243.61Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX40_MOUSE1.966e-2139.06Probable ATP-dependent RNA helicase DHX40 OS=Mus m... [more]
DHX15_ARATH2.272e-2144.03Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO2.568e-2139.85Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_CAEEL2.955e-2145.45Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX40_HUMAN4.380e-2139.06Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]
DHX40_RAT5.720e-2139.06Probable ATP-dependent RNA helicase DHX40 OS=Rattu... [more]
DHX40_PONAB5.720e-2139.06Probable ATP-dependent RNA helicase DHX40 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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