EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 9.757e-21
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLR-AASLPDFQVPEIKRIPIEELCLQVKLL 499
            ++P++S +PS  Q K+F+R P G RK I++TNIAET++T+D +++VID G  K K Y+P   +  L    VS+ASA QR GRAGR   G  YRLY++ +    L    VPEI+R  +  + L +K L
Sbjct:  685 VLPIYSQLPSDLQAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSL 811          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20
Identity = 54/127 (42.52%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499
            ++P++S +PS  Q K+F++ P G RK I++TNIAET++T+D +++VIDSG  K K ++P   +  LQ   +S+A+A QR+GRAGR   G  +RLY+Q    + L    VPEI+R  +  + L +K L
Sbjct:  775 VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL 901          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20
Identity = 54/127 (42.52%), Postives = 84/127 (66.14%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499
            ++P++S +PS  Q K+F++ P G RK I++TNIAET++T+D +++VIDSG  K K ++P   +  LQ   +S+A+A QR+GRAGR   G  +RLY+Q    + L    VPEI+R  +  + L +K L
Sbjct:  775 VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL 901          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20
Identity = 55/133 (41.35%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502
            D      +PL+S++   +Q++VF   P G R  ++STN+AET++TI  V YVID G  K + YD    VS      +S+AS  QRAGRAGR  AG  YRLYS         F  PEI   P ++L L +K ++
Sbjct:  571 DCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRAGRAGRISAGHAYRLYSSAVYQDFVKFADPEILSKPADQLVLHLKSMN 703          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPP------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + PL+  +P  QQ+++F+  P      PG RK+++STNIAET++TID +VYV+D G  K+K Y+P   V +L  S +SKASA+QRAGRAGR + G  +RLY+ +     L +   PEI R  +    L++K L
Sbjct:  341 VYPLYGSLPPHQQQRIFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKL 472          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.708e-20
Identity = 52/133 (39.10%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508
            + +I  ++S +P+  Q K+F+  PP  RK++L+TNIAET++TID ++YVID G  K+K ++P   + +L  + VS+ASA QR GRAGR   G  +RL++     + L +  +PEI+R  +  + L +K +  N
Sbjct:  708 ELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQRTNLGNVVLLLKSMGIN 840          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.284e-20
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508
            + +I+P++S +PS  Q K+F+  P G RK++ +TNIAET+ITID + YV+D G  K   Y+    +  L  S +S+A A QR GRAGR   G  YRLY++    + + +  VPEI+R  +    L +K +  N
Sbjct:  724 ELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGIN 856          

HSP 2 Score: 23.8682 bits (50), Expect = 5.284e-20
Identity = 13/50 (26.00%), Postives = 23/50 (46.00%), Query Frame = 1
Query:  538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPPIEGNKKLS 687
            ++PP    + NA+  L  +  L  + K+ NLG+++      P      LS
Sbjct:  864 MDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLS 913          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.324e-20
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGC-----RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + PL+  +P  QQ+++F+  P        RK+++STNIAET++TID +VYV+D G  K+K Y+P   V +L  S +SKASA+QRAGRAGR + G  +RLY+ +     L +   PEI R  +    L++K L
Sbjct:  323 VYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKL 454          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.260e-20
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            + + +P+++ +PS  Q K+F+  P   RK++L+TNIAET++TID + YVID G  K+ S+D  + V  L    +SKA+A QRAGRAGR   G  +RLY+       L +  +PEI+R  +  + L +K L
Sbjct:  607 ELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEIQRTNLGNVVLMLKSL 736          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.840e-19
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 2
Query:  125 IPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQV-PEIKRIPIEELCLQV 490
            +PL+S +P  QQ K+F       RK I+STNIAET++TID +V+V+D G  K+K+Y+P + V +L  + +SKASA QRAGRAGR + G  +RLY++     L   Q  PEI R  +  + LQ+
Sbjct:  321 LPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRSNLASVVLQL 441          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
MOG1_CAEEL9.757e-2144.09Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_HUMAN1.274e-2042.52Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN1.274e-2042.52Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
RHA2_CAEEL2.174e-2041.35Putative ATP-dependent RNA helicase rha-2 OS=Caeno... [more]
PRP43_YEAST2.174e-2043.61Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX16_DICDI3.708e-2039.10Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST5.284e-2039.85Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_SCHPO6.324e-2042.42Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_CAEEL8.260e-2040.77Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI1.840e-1945.53Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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