EY665652
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 9.757e-21 Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLR-AASLPDFQVPEIKRIPIEELCLQVKLL 499 ++P++S +PS Q K+F+R P G RK I++TNIAET++T+D +++VID G K K Y+P + L VS+ASA QR GRAGR G YRLY++ + L VPEI+R + + L +K L Sbjct: 685 VLPIYSQLPSDLQAKIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSL 811
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20 Identity = 54/127 (42.52%), Postives = 84/127 (66.14%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499 ++P++S +PS Q K+F++ P G RK I++TNIAET++T+D +++VIDSG K K ++P + LQ +S+A+A QR+GRAGR G +RLY+Q + L VPEI+R + + L +K L Sbjct: 775 VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL 901
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.274e-20 Identity = 54/127 (42.52%), Postives = 84/127 (66.14%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLL 499 ++P++S +PS Q K+F++ P G RK I++TNIAET++T+D +++VIDSG K K ++P + LQ +S+A+A QR+GRAGR G +RLY+Q + L VPEI+R + + L +K L Sbjct: 775 VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL 901
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20 Identity = 55/133 (41.35%), Postives = 75/133 (56.39%), Query Frame = 2 Query: 104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLD 502 D +PL+S++ +Q++VF P G R ++STN+AET++TI V YVID G K + YD VS +S+AS QRAGRAGR AG YRLYS F PEI P ++L L +K ++ Sbjct: 571 DCEPLYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRAGRAGRISAGHAYRLYSSAVYQDFVKFADPEILSKPADQLVLHLKSMN 703
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20 Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPP------PGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 + PL+ +P QQ+++F+ P PG RK+++STNIAET++TID +VYV+D G K+K Y+P V +L S +SKASA+QRAGRAGR + G +RLY+ + L + PEI R + L++K L Sbjct: 341 VYPLYGSLPPHQQQRIFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKL 472
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.708e-20 Identity = 52/133 (39.10%), Postives = 85/133 (63.91%), Query Frame = 2 Query: 113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508 + +I ++S +P+ Q K+F+ PP RK++L+TNIAET++TID ++YVID G K+K ++P + +L + VS+ASA QR GRAGR G +RL++ + L + +PEI+R + + L +K + N Sbjct: 708 ELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQRTNLGNVVLLLKSMGIN 840
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.284e-20 Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 2 Query: 113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAAS-LPDFQVPEIKRIPIEELCLQVKLLDPN 508 + +I+P++S +PS Q K+F+ P G RK++ +TNIAET+ITID + YV+D G K Y+ + L S +S+A A QR GRAGR G YRLY++ + + + VPEI+R + L +K + N Sbjct: 724 ELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGIN 856 HSP 2 Score: 23.8682 bits (50), Expect = 5.284e-20 Identity = 13/50 (26.00%), Postives = 23/50 (46.00%), Query Frame = 1 Query: 538 INPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPPIEGNKKLS 687 ++PP + NA+ L + L + K+ NLG+++ P LS Sbjct: 864 MDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLS 913
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.324e-20 Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGC-----RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYS-QLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 + PL+ +P QQ+++F+ P RK+++STNIAET++TID +VYV+D G K+K Y+P V +L S +SKASA+QRAGRAGR + G +RLY+ + L + PEI R + L++K L Sbjct: 323 VYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKL 454
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 8.260e-20 Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 2 Query: 113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ-LRAASLPDFQVPEIKRIPIEELCLQVKLL 499 + + +P+++ +PS Q K+F+ P RK++L+TNIAET++TID + YVID G K+ S+D + V L +SKA+A QRAGRAGR G +RLY+ L + +PEI+R + + L +K L Sbjct: 607 ELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEIQRTNLGNVVLMLKSL 736
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.840e-19 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 2 Query: 125 IPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQV-PEIKRIPIEELCLQV 490 +PL+S +P QQ K+F RK I+STNIAET++TID +V+V+D G K+K+Y+P + V +L + +SKASA QRAGRAGR + G +RLY++ L Q PEI R + + LQ+ Sbjct: 321 LPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRSNLASVVLQL 441 The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bpback to top |