EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ 412
            + +I P+++ +P  QQ K+F+  P  CRK++L+TNIAET++TID + YVID G +KE SY P   ++ L +   S+AS  QRAGRAGR   G  +R++++
Sbjct:  468 QMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTK 567          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  128 PLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            PL + +P  QQ +VF       RK++LSTNIAET++TI  + YVID+G  K K ++    + +L    +S+++A QR+GRAGR  AG  YR+Y++     LP   +PEIKRI + +  L +K    N
Sbjct:  342 PLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDKLPKETIPEIKRIDLSQAVLTLKARGQN 468          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ 412
            D    V +PLH+ +   +Q +VF       RK+I STNIAET+ITID +VYV+DSG  K++ Y+PY   S L +  +SK+SA QR+GRAGR   G  +RLY++
Sbjct:  266 DCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGKVFRLYTE 368          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            I+PL + + + +Q K+F   P G  +I+L+TN+AET++T+  + YVID G  +   Y     V  L    +S+ASA QR GR GR   GI  RLYS+    S P+F  PEI R  +  + LQ+  L
Sbjct:  324 ILPLFARLSAQEQNKIFH--PSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTAL 447          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQ-VPEIKRIPIEELCLQVKLLD 502
            I+P++S +P+  Q K+F+      RKII++TNIAET++TI  + YVID G  K K Y+P   + +L  + +SKA+A QR+GRAGR   G  YRLY++         Q +PEI+R  +    L +K LD
Sbjct:  608 ILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTIPEIQRTNLSNTLLLLKSLD 735          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.458e-16
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  128 PLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVK 493
            PL++ +P+VQQ  VF       RK++ STNIAET++TI  V +V+DSG  K K +     ++TL +  +S+ASA QR+GRAGR   G  +RLY +     LP    PEI R  +    L +K
Sbjct:  332 PLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQRSGRAGRESEGKSFRLYCESDYVKLPKQSEPEIARSDVTSPVLMLK 453          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            I+PL++ + + +Q +VF+      R+I+L+TN+AET++T+  + YVID G  +   Y     V  L    +S+ASA QR GR GR   GI  RLYS+    S P+F  PEI R  +  + LQ+  L
Sbjct:  320 ILPLYARLSNSEQNRVFQSHSG--RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTAL 443          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.105e-15
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  149 SVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490
            ++Q  KV K     CRK+IL+TNIAE+++TI  V YVIDS R  +  +DP     + +  WVSK+ A+QR GR GR   G  YRL +     SL D + P I R+ + E  L +
Sbjct:  307 ALQTMKVSK----SCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAEQRKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMI 416          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YL540_MIMIV (Putative ATP-dependent RNA helicase L540 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L540 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.040e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  194 RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508
            +K++++TN+AE+++TID +VYVIDSG      +DP      L+  +VSKA A QR GR GR + G+ Y L ++ +   L D+  P+I R  I    +++  + PN
Sbjct:  315 QKLVMATNVAESSLTIDGLVYVIDSGYELSSRFDPECYGQILEKKFVSKAQALQRRGRVGRTEPGVCYHLLTKQQFDGLADYPTPDILRQDITMDLIKIIQVSPN 419          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPB_ECOLI (ATP-dependent RNA helicase hrpB OS=Escherichia coli (strain K12) GN=hrpB PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490
            ++ PL+  +    Q+K     P G RK++L+TNIAET++TI+ +  V+D  + +   +DP   ++ L +  VS+AS  QRAGRAGR + GI   L ++ +A        PEI +  +  L +++
Sbjct:  241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMEL 364          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
PRP2_YEAST6.992e-1945.00Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRH1_SCHPO6.992e-1940.94Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
YK99_SCHPO3.470e-1847.57Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
HRPA_HAEIN2.249e-1739.68ATP-dependent RNA helicase hrpA homolog OS=Haemoph... [more]
PRP16_YEAST2.938e-1742.19Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHR2_YEAST1.458e-1641.80Probable ATP-dependent RNA helicase DHR2 OS=Saccha... [more]
HRPA_ECOLI3.248e-1638.89ATP-dependent RNA helicase hrpA OS=Escherichia col... [more]
C3H4_ORYSJ2.105e-1542.11Zinc finger CCCH domain-containing protein 4 OS=Or... [more]
YL540_MIMIV3.040e-1438.10Putative ATP-dependent RNA helicase L540 OS=Acanth... [more]
HRPB_ECOLI1.155e-1333.87ATP-dependent RNA helicase hrpB OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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