EY665652
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19 Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 2 Query: 113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ 412 + +I P+++ +P QQ K+F+ P CRK++L+TNIAET++TID + YVID G +KE SY P ++ L + S+AS QRAGRAGR G +R++++ Sbjct: 468 QMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTK 567
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19 Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 2 Query: 128 PLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508 PL + +P QQ +VF RK++LSTNIAET++TI + YVID+G K K ++ + +L +S+++A QR+GRAGR AG YR+Y++ LP +PEIKRI + + L +K N Sbjct: 342 PLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDKLPKETIPEIKRIDLSQAVLTLKARGQN 468
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18 Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 104 DXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQ 412 D V +PLH+ + +Q +VF RK+I STNIAET+ITID +VYV+DSG K++ Y+PY S L + +SK+SA QR+GRAGR G +RLY++ Sbjct: 266 DCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGKVFRLYTE 368
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17 Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 I+PL + + + +Q K+F P G +I+L+TN+AET++T+ + YVID G + Y V L +S+ASA QR GR GR GI RLYS+ S P+F PEI R + + LQ+ L Sbjct: 324 ILPLFARLSAQEQNKIFH--PSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTAL 447
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17 Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQ-VPEIKRIPIEELCLQVKLLD 502 I+P++S +P+ Q K+F+ RKII++TNIAET++TI + YVID G K K Y+P + +L + +SKA+A QR+GRAGR G YRLY++ Q +PEI+R + L +K LD Sbjct: 608 ILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTIPEIQRTNLSNTLLLLKSLD 735
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.458e-16 Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 2 Query: 128 PLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVK 493 PL++ +P+VQQ VF RK++ STNIAET++TI V +V+DSG K K + ++TL + +S+ASA QR+GRAGR G +RLY + LP PEI R + L +K Sbjct: 332 PLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAETSVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQRSGRAGRESEGKSFRLYCESDYVKLPKQSEPEIARSDVTSPVLMLK 453
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16 Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 122 IIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499 I+PL++ + + +Q +VF+ R+I+L+TN+AET++T+ + YVID G + Y V L +S+ASA QR GR GR GI RLYS+ S P+F PEI R + + LQ+ L Sbjct: 320 ILPLYARLSNSEQNRVFQSHSG--RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTAL 443
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.105e-15 Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 2 Query: 149 SVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490 ++Q KV K CRK+IL+TNIAE+++TI V YVIDS R + +DP + + WVSK+ A+QR GR GR G YRL + SL D + P I R+ + E L + Sbjct: 307 ALQTMKVSK----SCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAEQRKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMI 416
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YL540_MIMIV (Putative ATP-dependent RNA helicase L540 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L540 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.040e-14 Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 194 RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDPN 508 +K++++TN+AE+++TID +VYVIDSG +DP L+ +VSKA A QR GR GR + G+ Y L ++ + L D+ P+I R I +++ + PN Sbjct: 315 QKLVMATNVAESSLTIDGLVYVIDSGYELSSRFDPECYGQILEKKFVSKAQALQRRGRVGRTEPGVCYHLLTKQQFDGLADYPTPDILRQDITMDLIKIIQVSPN 419
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: HRPB_ECOLI (ATP-dependent RNA helicase hrpB OS=Escherichia coli (strain K12) GN=hrpB PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13 Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 2 Query: 119 VIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490 ++ PL+ + Q+K P G RK++L+TNIAET++TI+ + V+D + + +DP ++ L + VS+AS QRAGRAGR + GI L ++ +A PEI + + L +++ Sbjct: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMEL 364 The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bpback to top |