EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.179e-12
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 2 
Query:  194 RKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQV 490
            RK+IL+TNIAE+++TI  V YVIDS R  +  +DP      +Q  WVS++ A+QR GR GR   G  YRL        L + + P I ++ + +  L +
Sbjct:  322 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQVLHI 420
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
C3H31_ARATH2.179e-1239.39Zinc finger CCCH domain-containing protein 31 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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