CV886992
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26 Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = -3 Query: 197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739 P+YL G PGD G+D GL+ DPEN + E+++ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26 Identity = 76/198 (38.38%), Postives = 101/198 (51.01%), Query Frame = -3 Query: 206 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 739 P+YL+G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ K G+ W+ AG +Y + S ++ + IL VE ++ P +DPI YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE--GYRVAGGPLGEVEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26 Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = -3 Query: 197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739 P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 90/252 (35.71%), Postives = 131/252 (51.98%), Query Frame = -3 Query: 197 AVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 889 A+ P A K+ L+ SS ++ N +V + KPVSS + + + ++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 7 ALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPW-YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNN 253
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = -3 Query: 197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742 +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+ W+ AG A+ F+ S ++ ++ +L +VE R V P+ + + YPGG F+PL A E K KEL NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = -3 Query: 197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742 +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+ W+ AG A+ F+ S ++ ++ +L +VE R V P+ + + YPGG F+PL A E K KEL NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 84/232 (36.21%), Postives = 121/232 (52.16%), Query Frame = -3 Query: 197 LTGSSGKLNREVA--LKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 853 +TG+ R+ A KPVSSS+ + + ++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ + G ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 27 ITGNGKVTMRKTASKAKPVSSSSPW-YGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26 Identity = 84/245 (34.29%), Postives = 117/245 (47.76%), Query Frame = -3 Query: 197 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 871 A S L G+ R+ PVS S + + K +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S +++ + IL VE ++ P DP+ YPGG F+PL A + E K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 21 APSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26 Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = -3 Query: 197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742 +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+F + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 66 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26 Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = -3 Query: 197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742 +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ +K G+ W+ AG ++ F+ ++ L H I W V + + Y + +G YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVW-----ASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 252 The following BLAST results are available for this feature:
BLAST of CV886992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886992 ID=CV886992; Name=CV886992; organism=Citrus sinensis; type=EST; length=891bpback to top |