CV886992

Overview
NameCV886992
Unique NameCV886992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 76/191 (39.79%), Postives = 103/191 (53.93%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPEN     + E+++ RWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 76/198 (38.38%), Postives = 101/198 (51.01%), Query Frame = -3
Query:  206 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 739
            P+YL+G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  K G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P    +DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP
Sbjct:   66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE--GYRVAGGPLGEVEDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 90/252 (35.71%), Postives = 131/252 (51.98%), Query Frame = -3
Query:  197 AVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 889
            A+  P A K+  L+ SS ++  N +V +       KPVSS + +     + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    7 ALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPW-YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNN 253          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 84/232 (36.21%), Postives = 121/232 (52.16%), Query Frame = -3
Query:  197 LTGSSGKLNREVA--LKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 853
            +TG+     R+ A   KPVSSS+ +     + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      +  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   27 ITGNGKVTMRKTASKAKPVSSSSPW-YGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.732e-26
Identity = 84/245 (34.29%), Postives = 117/245 (47.76%), Query Frame = -3
Query:  197 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 871
            A  S  L G+     R+    PVS S  +  +  K        +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S        +++  + IL   VE   ++    P     DP+            YPGG F+PL  A     + E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   21 APSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V    + + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVW-----ASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 252          
The following BLAST results are available for this feature:
BLAST of CV886992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB2B_PINSY3.623e-2639.79Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_POLMU3.623e-2638.38Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_CUCSA3.623e-2639.79Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_NICPL4.732e-2635.71Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_ORYSJ4.732e-2636.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.732e-2636.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL4.732e-2636.21Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_APIGR4.732e-2634.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP6.180e-2639.06Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_TOBAC6.180e-2637.63Chlorophyll a-b binding protein 36, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026E02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886992 ID=CV886992; Name=CV886992; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTGGTGTAAATGATAATATAAATACCATCATAGTT
CCCCTGTACATTGAGAGTTTCCATGTTTACATTGATGCTCAAATCTCACT
CAAAAACTACAGATTCATGGTTACAAAAGAAAGAAACAGGATCCGGGATG
GCCAATCCATCTTTGATTAATTACCACTTAGTGTCTGGACGATGGTGTTG
TGCCATGGGTCAGAGATGTGTTGCAGGAGGTTTTCAAATGGCCCTTTGCC
TGTCACATTGTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATC
TCCCATTGGCAAGCTCCTTCTCCTTTGCCTCGTCAGTGGGTGCAAAGTTG
AGTGGGTTGAAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCT
GTACTGCTTGAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGT
CTTGCCATCTTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACG
AAAAGGGTCGATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCA
TTGAGGAGCATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACA
TTCCAACAACCCCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGC
ACATACCACTTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAA
TCCATTGTCACCGGGGAGGCTGCCGTTGAGGTAAGTTGGCGAGGCCAAGC
CCGGTAACCACTCCCCCTTCTTGGCTTCAACTTTGAAAGAAGCGCTTGAG
CTCACTGGTTTCAAGGCCACTTCCCTGTTTAATTTACCCGAAGACCCAGT
AAGGAACCTGGATTTGGATGCGCATGGCCGGAACACGGCGG
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