CV886992

Overview
NameCV886992
Unique NameCV886992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.377e-25
Identity = 73/201 (36.32%), Postives = 100/201 (49.75%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     DPI            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 76/192 (39.58%), Postives = 102/192 (53.12%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YLNG   GD G+D  GL+ DPE      + E++++RWAMLG +G L PE+  K G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 74/195 (37.95%), Postives = 103/195 (52.82%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 73/194 (37.63%), Postives = 100/194 (51.55%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIW-----AAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 74/194 (38.14%), Postives = 100/194 (51.55%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP  N
Sbjct:   37 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWAS-----QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVAN 224          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 75/194 (38.66%), Postives = 102/194 (52.58%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL  GRLAML+  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNN 252          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPE      + E+++S WAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 193          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 74/201 (36.82%), Postives = 101/201 (50.25%), Query Frame = -3
Query:  197 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 739
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+++P +N
Sbjct:   46 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNN 232          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 74/200 (37.00%), Postives = 103/200 (51.50%), Query Frame = -3
Query:  197 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII--NAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 742
            +P YL G  PGD G+D  GL+ DP+    Y + EL+++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA     ++    L H   I     ++            N GS        +  L   +  YPGG F+PL  A       E K KE+ NGRLAM + LGF VQ  VTGKGP +NL  H++DP  N
Sbjct:   50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.348e-25
Identity = 81/233 (34.76%), Postives = 123/233 (52.79%), Query Frame = -3
Query:  197 LTGSSGKLNREVALK--PVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 853
            +TG+   + R+   K  PVSS + +     + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP +NL+ H++DP +N
Sbjct:   27 ITGNGKAIMRKTVTKAKPVSSGSPW-YGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNN 254          
The following BLAST results are available for this feature:
BLAST of CV886992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB21_GOSHI1.377e-2536.32Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA1.798e-2539.58Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SPIOL1.798e-2537.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP1.798e-2537.63Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.798e-2538.14Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_MAIZE1.798e-2538.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA1.798e-2539.27Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SOYBN1.798e-2536.82Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNTE2.348e-2537.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC2.348e-2534.76Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026E02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886992 ID=CV886992; Name=CV886992; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTGGTGTAAATGATAATATAAATACCATCATAGTT
CCCCTGTACATTGAGAGTTTCCATGTTTACATTGATGCTCAAATCTCACT
CAAAAACTACAGATTCATGGTTACAAAAGAAAGAAACAGGATCCGGGATG
GCCAATCCATCTTTGATTAATTACCACTTAGTGTCTGGACGATGGTGTTG
TGCCATGGGTCAGAGATGTGTTGCAGGAGGTTTTCAAATGGCCCTTTGCC
TGTCACATTGTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATC
TCCCATTGGCAAGCTCCTTCTCCTTTGCCTCGTCAGTGGGTGCAAAGTTG
AGTGGGTTGAAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCT
GTACTGCTTGAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGT
CTTGCCATCTTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACG
AAAAGGGTCGATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCA
TTGAGGAGCATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACA
TTCCAACAACCCCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGC
ACATACCACTTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAA
TCCATTGTCACCGGGGAGGCTGCCGTTGAGGTAAGTTGGCGAGGCCAAGC
CCGGTAACCACTCCCCCTTCTTGGCTTCAACTTTGAAAGAAGCGCTTGAG
CTCACTGGTTTCAAGGCCACTTCCCTGTTTAATTTACCCGAAGACCCAGT
AAGGAACCTGGATTTGGATGCGCATGGCCGGAACACGGCGG
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