CV886960

Overview
NameCV886960
Unique NameCV886960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.092e-55
Identity = 108/177 (61.02%), Postives = 130/177 (73.45%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------SQSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PQP   L    PPPFL+KTY+MV+D +TD+IVSWS   NSFIVW   +F+  LLPK FKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLL++I RR+         Q  Q   G+     AC+EVG++GL+ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  M  RL
Sbjct:   24 PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRL 200          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.380e-54
Identity = 107/171 (62.57%), Postives = 129/171 (75.44%), Query Frame = 2
Query:  407 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-----------SQSMQQRGG-----EACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PPPFL+KTY+MVED +TDAIVSWS T NSFIVWD  +FS  LLPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK I RR+ V           SQ + Q  G      +C+EVG++GL+ E+E+LKRD+NVLM E+V+LRQ QQ + ++L  +   L
Sbjct:   50 PPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHL 220          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.016e-54
Identity = 104/162 (64.20%), Postives = 126/162 (77.78%), Query Frame = 2
Query:  407 PPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQ-----RGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PPPFL KTYEMV+D +TDA+VSW    NSF+VW++ +F+  LLPKYFKHSNFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLKTI RR+  H +  +QQ         AC+EVG++G++ E+E LKRD+NVLM E+VRLRQ QQ +  QL  +  RL
Sbjct:   35 PPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRL 196          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.411e-52
Identity = 99/154 (64.29%), Postives = 124/154 (80.52%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--HVSQSMQQRGGE-----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 850
            PPFL+KTY+MV+D  T+ +VSWS   NSF+VW + +FS  LLPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL G+K LLK+I RR+  HV Q+ QQ   +     AC+EVG++G++ E+ERLKRD+NVLM E+VRLRQ QQ + +QL
Sbjct:   26 PPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQL 179          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.478e-48
Identity = 97/166 (58.43%), Postives = 119/166 (71.69%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PQP+EGLH+  PPPFLTKT+EMV+D +TD IVSW+R   SF+VWD H FST LLP++FKHSNFSSFIRQLNTYGFRK++ +RWEFANE FL GQ+ LLK IKRR   + S      +AC E            L+R++ VLM EIV LRQ QQ ++  + AME R+
Sbjct:   16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPS-SSPSHDACNE------------LRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRI 168          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.478e-48
Identity = 93/153 (60.78%), Postives = 116/153 (75.82%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV------SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 850
            PPFL+KTY+MV+D  TD +VSWS   NSF+VW+  +F+   LPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQK +LK+I RR+           +Q     AC+EVG++GL+ E+ERL+RD+NVLM E+VRLRQ QQ +   L
Sbjct:   22 PPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHL 174          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.788e-47
Identity = 96/168 (57.14%), Postives = 120/168 (71.43%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRN--SFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSM--QQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 865
            P+P+EGL +AGP PF+ KTYEMV D +TDA+VSW    +  SF+VWD H  +  +LP++FKH+NFSSF+RQLNTYGFRKV PDRWEFANE FL GQKHLLK IKRRR VS+ +   Q   +A +  GQ    GE+  LKRDR  L AE++ L+Q     + QL AME+
Sbjct:   80 PRPMEGLGEAGPAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRR-VSKPLVDSQLRNKASVVFGQPEAPGEVVSLKRDRAALRAEVIMLKQQYNACKSQLIAMEE 246          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.059e-46
Identity = 93/166 (56.02%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P P+EGL +AGP PFLTKT+EMV D +T+ IVSW+R   SF+VWD H FS T+LP YFKH+NFSSF+RQLNTYGFRK++ +RWEF NEGFL GQ+ LLK+IKRR   S        ++  E    G+  EL +L+ +R+VLM EI  LRQ +Q++R  + AME R+
Sbjct:   15 PVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDPGV--ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRI 178          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.812e-45
Identity = 90/167 (53.89%), Postives = 115/167 (68.86%), Query Frame = 2
Query:  371 MPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            +P PLEGL +  P  FLTKTY +VED ST+ IVSWSR  NSFIVW+   F+   LP+ FKH+NFSSF+RQLNTYGF+K+D +RWEFANE FL G++HLLK IKRR+  SQ+  Q             L+GE+  L+RDR  L  E+VRLR+ Q+  +  L  ME++L
Sbjct:    5 LPIPLEGLKETPPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQ------------SLEGEIHELRRDRMALEVELVRLRRKQESVKTYLHLMEEKL 159          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA6A_ORYSJ (Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6A PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.393e-44
Identity = 93/169 (55.03%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  374 PQPLEGLHDAGPP--PFLTKTYEMVEDLSTDAIVSWS-RTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P PL      G    PFL KT+EMVED +TDA+VSW    RNSF+VWD H F+  LLP +FKH+NFSSF+RQLNTYGFRKV  DRWEFANE FLGGQ+HLL  I+RRR  + +         +  G  G +GE+ERL+RD+  L  E+ RLR+ QQ++R QL  ME R+
Sbjct:   28 PVPLPAAMGVGAAVAPFLVKTFEMVEDPATDAVVSWGGAARNSFVVWDPHAFAAGLLPLHFKHANFSSFLRQLNTYGFRKVSADRWEFANEDFLGGQRHLLANIRRRRRGAGTGSTT--PRAVNCGGGGGEGEVERLRRDKEALARELARLRRQQQEARAQLLDMERRV 194          
The following BLAST results are available for this feature:
BLAST of CV886960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA1D_ARATH8.092e-5561.02Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA1A_ARATH1.380e-5462.57Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ4.016e-5464.20Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1B_ARATH6.411e-5264.29Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA7A_ARATH1.478e-4858.43Heat stress transcription factor A-7a OS=Arabidops... [more]
HFA1E_ARATH1.478e-4860.78Heat stress transcription factor A-1e OS=Arabidops... [more]
HFA6B_ORYSJ2.788e-4757.14Heat stress transcription factor A-6a OS=Oryza sat... [more]
HFA7B_ARATH1.059e-4656.02Heat stress transcription factor A-7b OS=Arabidops... [more]
HFA6A_ARATH5.812e-4553.89Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA6A_ORYSJ8.393e-4455.03Putative heat stress transcription factor A-6a OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026C04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886960 ID=CV886960; Name=CV886960; organism=Citrus sinensis; type=EST; length=878bp
CTGACCCACATCTGACAAATGGCGGAAAGCTTCGAAGAATTTCGGAAGAA
CCTGCCACATAACAGATGATCTCTTTATCTGGAACCTTCTCTTCCACCCT
CTTATAATCCTAAATTCGCTGCCACACTTAGACTCGACACTCAAATCTCC
CCTGGAGATCTTACTGAAAAATTACAATCAAGTCCGTAAACAACTCAAAA
TTCGTACTAAAGCCTACTGAAAGCTCGCTTAATTAATAACTCTCTGTTTA
AAACCTATATTAGCATTAGCTATGGAGGGAGTGAGGGTGAAGGAAGAAGA
GACGGTGACGTACGCAGCGACGACAGCTACTGCTGCATCAGCGTCGTCGT
CTTCGTCGTCTTCCAACTTTATGCCGCAGCCGTTGGAGGGTTTGCACGAT
GCAGGCCCGCCTCCGTTTCTGACGAAAACCTACGAAATGGTCGAGGATCT
ATCAACGGATGCGATCGTTTCCTGGAGCAGAACTCGCAATAGCTTCATTG
TGTGGGACTCTCACCAGTTCTCTACTACTTTGCTTCCGAAATATTTCAAG
CACAGTAATTTTTCTAGCTTCATTCGCCAGCTCAACACTTATGGTTTTAG
AAAGGTTGATCCTGATAGATGGGAATTTGCCAATGAAGGATTTTTGGGAG
GGCAGAAGCATCTACTGAAAACAATCAAGAGAAGGCGACACGTCTCACAG
AGTATGCAACAGCGAGGAGGAGAAGCTTGTCTTGAGGTGGGACAATATGG
ACTGGATGGTGAGCTTGAAAGATTAAAGAGGGACCGAAATGTGTTGATGG
CAGAAATTGTTAGGCTGAGGCAACATCAGCAGCAATCAAGAGATCAACTC
AGTGCAATGGAGGATAGGTTATTAAGCA
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