CV886960

Overview
NameCV886960
Unique NameCV886960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.583e-42
Identity = 87/159 (54.72%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  404 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 877
            GPPPFL KTYEMVED +T+ +VSW     SF+VW+   FS  LLPKYFKH+NFSSFIRQLNTYGFRK+DP+RWEFANE F+ G  HLLK I RR+ V S S+Q +      E  +  L+ E+ RLK ++++L+A++ R  Q Q     Q+ AME RL++
Sbjct:   17 GPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVA 175          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.067e-42
Identity = 83/161 (51.55%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  392 LHDAGP-PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            LH+ G   PFL KT+E+V+D  TD +VSWS TR SFI+WDS++FS  LLPKYFKH NFSSFIRQLN+YGF+KVD DRWEFANEGF GG+KHLLK IKRR   ++   +       E        E+E LK +++ +  E+++L+Q Q++S+ Q+  +++++
Sbjct:   63 LHEIGLITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTET-------EVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKI 216          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.856e-42
Identity = 87/163 (53.37%), Postives = 116/163 (71.17%), Query Frame = 2
Query:  413 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS---------MQQRGGEACLEVGQY-GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PFLTK Y+MV D +TD ++SW+    SF++WDSH F   L  ++FKHSNF+SFIRQLNTYGFRKV PDRWE+ANEGF+ GQKHLLKTIKRR+  SQ          ++   G   +E+G+Y GL+ E+E LKRD+ +LM ++V LR +QQ S  ++  + +RL
Sbjct:   50 PFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERDL-HRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKTAPGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLRHYQQTSNLEVQNLIERL 211          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.482e-40
Identity = 84/158 (53.16%), Postives = 112/158 (70.89%), Query Frame = 2
Query:  404 GPPPFLTKTYEMVEDLSTDAIVSWSRTRN-SFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 874
            GP PFL KTYEMV+D STDA+VSWS   + SF+VW+  +F+  LLP YFKHSNFSSFIRQLNTYGFRK+DP+RWEFANE F+ GQKHLLK I RR+ +       G  A  +  +   + E+ERL R+++ L A++ + +Q Q  + +Q+  +E R+L
Sbjct:   18 GPAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHSHPPG--ALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVL 173          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.311e-40
Identity = 86/170 (50.59%), Postives = 113/170 (66.47%), Query Frame = 2
Query:  374 PQPLEGLHDAGP--PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 877
            P+PLE L   GP  PPFL+KTY++V +   D ++SW    NSF+VWD   F+  +LP +FKH+NFSSF+RQLNTYGFRKV  DRWEFA+E FL   KHLLK I RRR    S  Q+ G      G+ GLD EL  L+R+++ L+ E+ RL+Q   Q+ +Q+S +  RL S
Sbjct:   53 PRPLEALLQ-GPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRR---SSPTQQSGLQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLES 218          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 6.224e-39
Identity = 81/174 (46.55%), Postives = 114/174 (65.52%), Query Frame = 2
Query:  371 MPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRH-------VSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            +P PL+ L     PPFL+KT+++V+D + D ++SW  T  SF+VWD  +F+  +LP+ FKH+NFSSF+RQLNTYGFRK+D D+WEFANE FL G+KHLLK I RRR         S + Q +G     EVG     GE+E+L+++R  LM E+V L+Q  + +   +  +  RL
Sbjct:   41 LPMPLDILQGNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPT--EVG-----GEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRL 207          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.129e-39
Identity = 82/156 (52.56%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  413 PFLTKTYEMVEDLSTDAIVSWSRTR-NSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQ--YGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PFL K Y+MV+D +TD+I+SWS +  NSF++ D+  FS  LLPKYFKHSNFSSFIRQLN YGFRKVD DRWEFAN+GF+ GQK LLK + RR++V  S Q +         Q   GL  E++ LK D+ VL  E++++RQ+Q+ +  ++  +EDR+
Sbjct:   19 PFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQEKSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRV 174          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.365e-38
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  404 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            GP PFL KTYEMV+D STD IVSWS   NSFIVW+  +FS  LLP YFKH+NFSSFIRQLNTYGFRK+DP+RWEF N+ F+  QKHLLK I RR+ +             E  +  L  ++++L R++  + A++++ +Q +  ++ Q   M + +
Sbjct:   20 GPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQE--RAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHV 173          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 78/170 (45.88%), Postives = 117/170 (68.82%), Query Frame = 2
Query:  371 MPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQ--QRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            M +   G+  +  PPFLTKTYEMV+D S+D+IVSWS++  SFIVW+  +FS  LLP++FKH+NFSSFIRQLNTYGFRK DP++WEFAN+ F+ GQ HL+K I RR+ V S S+   Q       +  +  ++ ++ERL +++  L+ E+ +  + ++    Q+  +++RL
Sbjct:    1 MDENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERL 170          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHV-SQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PPFL+KTYEMV+D STDA+V W+    SF+V +  +F   LLPKYFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+ GQ+H LK I RR+ + S S   +G     +  +   + E+ERLK D   L +E+      +     ++ A+E++L
Sbjct:   11 PPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKL 165          
The following BLAST results are available for this feature:
BLAST of CV886960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA4D_ORYSJ1.583e-4254.72Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFA9_ARATH2.067e-4251.55Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HSFA9_ORYSJ7.856e-4253.37Heat stress transcription factor A-9 OS=Oryza sati... [more]
HSFA5_ORYSJ1.482e-4053.16Heat stress transcription factor A-5 OS=Oryza sati... [more]
HSFA3_ORYSJ4.311e-4050.59Heat stress transcription factor A-3 OS=Oryza sati... [more]
HSFA3_ARATH6.224e-3946.55Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HSFA8_ARATH8.129e-3952.56Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HSFA5_ARATH2.365e-3848.72Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HFA4A_ARATH1.533e-3745.88Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4B_ORYSJ5.826e-3749.03Heat stress transcription factor A-4b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026C04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886960 ID=CV886960; Name=CV886960; organism=Citrus sinensis; type=EST; length=878bp
CTGACCCACATCTGACAAATGGCGGAAAGCTTCGAAGAATTTCGGAAGAA
CCTGCCACATAACAGATGATCTCTTTATCTGGAACCTTCTCTTCCACCCT
CTTATAATCCTAAATTCGCTGCCACACTTAGACTCGACACTCAAATCTCC
CCTGGAGATCTTACTGAAAAATTACAATCAAGTCCGTAAACAACTCAAAA
TTCGTACTAAAGCCTACTGAAAGCTCGCTTAATTAATAACTCTCTGTTTA
AAACCTATATTAGCATTAGCTATGGAGGGAGTGAGGGTGAAGGAAGAAGA
GACGGTGACGTACGCAGCGACGACAGCTACTGCTGCATCAGCGTCGTCGT
CTTCGTCGTCTTCCAACTTTATGCCGCAGCCGTTGGAGGGTTTGCACGAT
GCAGGCCCGCCTCCGTTTCTGACGAAAACCTACGAAATGGTCGAGGATCT
ATCAACGGATGCGATCGTTTCCTGGAGCAGAACTCGCAATAGCTTCATTG
TGTGGGACTCTCACCAGTTCTCTACTACTTTGCTTCCGAAATATTTCAAG
CACAGTAATTTTTCTAGCTTCATTCGCCAGCTCAACACTTATGGTTTTAG
AAAGGTTGATCCTGATAGATGGGAATTTGCCAATGAAGGATTTTTGGGAG
GGCAGAAGCATCTACTGAAAACAATCAAGAGAAGGCGACACGTCTCACAG
AGTATGCAACAGCGAGGAGGAGAAGCTTGTCTTGAGGTGGGACAATATGG
ACTGGATGGTGAGCTTGAAAGATTAAAGAGGGACCGAAATGTGTTGATGG
CAGAAATTGTTAGGCTGAGGCAACATCAGCAGCAATCAAGAGATCAACTC
AGTGCAATGGAGGATAGGTTATTAAGCA
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