CV886960

Overview
NameCV886960
Unique NameCV886960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 2
Query:  416 FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV------------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGE----------ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 850
            F  K Y MV D STD+++ WS   +SF+V     F+  +LP+YFKH+NFSSF+RQLN YGF KV              +  EFAN  F   Q  LL  + R++  SQ +++                + + Q  L  EL R++ D   L  E +  R+ Q++ ++ +
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAALWQENMENRERQRRHQETI 219          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.220e-18
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  401 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACL----------EVGQYGLDGELERLKRDRNVLMAEIVRLR-QHQQQSR 841
            AG P FL+K + +V +  ++ +++WS+   SF+V D  +F+  +LPKYFKH+N +SF+RQLN YGFRKV                EF +  F  G++ LL+ IKR+   S+  + +  +  L          E+ Q  ++  L  LKR+   L  E+  LR +H +Q +
Sbjct:   19 AGVPAFLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRKVSSSRPEENKISQEDLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAKHLKQQQ 187          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.082e-18
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQR----------GGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLR-QHQQQSR 841
            P FL+K + +VE+  T+  ++WS+   SF+V D  +F+  +LPKYFKH+N +SF+RQLN YGFRKV                EF +  F  GQ  LL+ IKR+   S+  + +               +++ Q  ++  L  LK +   L  E+  LR +H QQ +
Sbjct:    8 PAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQ 173          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.082e-18
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQR----------GGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLR-QHQQQSR 841
            P FL+K + +VE+  T+  ++WS+   SF+V D  +F+  +LPKYFKH+N +SF+RQLN YGFRKV                EF +  F  GQ  LL+ IKR+   S+  + +               +++ Q  ++  L  LK +   L  E+  LR +H QQ +
Sbjct:    8 PAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQ 173          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  410 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV-----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGG 721
            P F+ K + M+ D S   ++ W+    SFIV +  +F   +LPKYFKHSNF+SF+RQLN YG+ KV             D+W+F NE F+ G++ LL+ I R++  S +     G
Sbjct:  173 PAFVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSNNHNSPSG 287          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 56/170 (32.94%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  401 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKV----------DPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRG---GEACLEV---------GQYGLDGELERLKRDRNVLMAEIVRLRQ-HQQQSR 841
            +G P FL K + +V+D  T+ ++ W++   SF++ +  QF+  LLP  +KH+N +SFIRQLN YGF K+          D D  EF++  F      LL  IKR+   +++   +G    EA  ++          Q  LD     +K++  VL  EI  LRQ H +Q +
Sbjct:   44 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRKISNNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWREIASLRQKHAKQQQ 213          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.341e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  404 GPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR----------WEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLK-RDRNV 793
            G   F+ K + M+E+     I+ WS + +SFIV D+++F+ T+LP++FKHSNF+SF+RQLN Y F KV  +           WEF ++ F    K LL  IKR+    +++        +E  +  +D  L+  K  DRN+
Sbjct:    6 GSSDFVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRKAPSKRNLANENTAPVIENLKQQVDSILDFQKLLDRNL 146          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.106e-11
Identity = 44/137 (32.12%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  416 FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQH 826
            F+ K + ++E+     IV+W+    SF+V D+ +F+T +LP +FKHSNF+SF+RQLN Y F KV                K   +  +R ++  QS + +  E  +  G+ GLD    ++   R VL+ E  +   H
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKV----------------KRSPEERQRCKYGEQSWEFQHPEFRVHYGK-GLDNIKRKIPAQRKVLLDESQKALLH 206          
The following BLAST results are available for this feature:
BLAST of CV886960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF_SCHPO1.220e-1833.53Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF2_CHICK1.220e-1833.73Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
HSF2_MOUSE2.082e-1833.73Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN2.082e-1833.73Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF_YEAST7.911e-1839.13Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF_DROME3.926e-1732.94Heat shock factor protein OS=Drosophila melanogast... [more]
PRR1_SCHPO4.341e-1635.46Transcription factor prr1 OS=Schizosaccharomyces p... [more]
SKN7_YEAST1.106e-1132.12Transcription factor SKN7 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026C04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886960 ID=CV886960; Name=CV886960; organism=Citrus sinensis; type=EST; length=878bp
CTGACCCACATCTGACAAATGGCGGAAAGCTTCGAAGAATTTCGGAAGAA
CCTGCCACATAACAGATGATCTCTTTATCTGGAACCTTCTCTTCCACCCT
CTTATAATCCTAAATTCGCTGCCACACTTAGACTCGACACTCAAATCTCC
CCTGGAGATCTTACTGAAAAATTACAATCAAGTCCGTAAACAACTCAAAA
TTCGTACTAAAGCCTACTGAAAGCTCGCTTAATTAATAACTCTCTGTTTA
AAACCTATATTAGCATTAGCTATGGAGGGAGTGAGGGTGAAGGAAGAAGA
GACGGTGACGTACGCAGCGACGACAGCTACTGCTGCATCAGCGTCGTCGT
CTTCGTCGTCTTCCAACTTTATGCCGCAGCCGTTGGAGGGTTTGCACGAT
GCAGGCCCGCCTCCGTTTCTGACGAAAACCTACGAAATGGTCGAGGATCT
ATCAACGGATGCGATCGTTTCCTGGAGCAGAACTCGCAATAGCTTCATTG
TGTGGGACTCTCACCAGTTCTCTACTACTTTGCTTCCGAAATATTTCAAG
CACAGTAATTTTTCTAGCTTCATTCGCCAGCTCAACACTTATGGTTTTAG
AAAGGTTGATCCTGATAGATGGGAATTTGCCAATGAAGGATTTTTGGGAG
GGCAGAAGCATCTACTGAAAACAATCAAGAGAAGGCGACACGTCTCACAG
AGTATGCAACAGCGAGGAGGAGAAGCTTGTCTTGAGGTGGGACAATATGG
ACTGGATGGTGAGCTTGAAAGATTAAAGAGGGACCGAAATGTGTTGATGG
CAGAAATTGTTAGGCTGAGGCAACATCAGCAGCAATCAAGAGATCAACTC
AGTGCAATGGAGGATAGGTTATTAAGCA
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