CV886946

Overview
NameCV886946
Unique NameCV886946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.305e-46
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = -1
Query:  315 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEE 848
            ENNKGARVLVVCSE+    FRGP+    D+L+ Q LF           DP   +E PL++L+S +QTI+P++D  +  H+RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSIFW+ HPGG AI+D VE          +A+R VLS YGN++SACVLFILDE+RKKS ++
Sbjct:  185 ENNKGARVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGSAALIVGTDPRPGLETPLFELISAAQTIIPNTDSHLKLHVREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVDGVEETLGLAPEKLRASRDVLSGYGNLTSACVLFILDEVRKKSKKD 362          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.461e-45
Identity = 92/175 (52.57%), Postives = 122/175 (69.71%), Query Frame = -1
Query:  324 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKS 848
            E+NKG R+LVVCSEIT   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+VE          +A+R VLSEYGN++SACVLFILDE+R KS
Sbjct:  187 ESNKGGRILVVCSEITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGTDPRPDLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGAQRFRASRDVLSEYGNLTSACVLFILDEVRNKS 361          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.701e-43
Identity = 89/166 (53.61%), Postives = 110/166 (66.27%), Query Frame = -1
Query:  351 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLF 848
            ENNKG RVLVVCSE+    FRGP+    D+L+ Q LF           +P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++NIE  L +AF P GISDWNSIFWI HPGG AILD VE          +A+R VLS+YGN++SACVLF
Sbjct:  185 ENNKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.803e-41
Identity = 86/163 (52.76%), Postives = 107/163 (65.64%), Query Frame = -1
Query:  360 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSAC 848
            ENNKG RVLVVCSE+    FRGP+    D L+ Q LF           +P   +E PL++LVS +QT +PD+D  +  HLRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+VE          +A+R VLSE GN++SAC
Sbjct:  182 ENNKGGRVLVVCSEVMLNVFRGPSLEQEDYLLAQCLFGDGSAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSHLKLHLREMGLTFHCSKAVPSLITQNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_FRAAN (Chalcone synthase RJ5 (Fragment) OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.727e-36
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = -1
Query:  222 ISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 509
            I+DWNS+FWIAHPGGPAILDQVE+         +ATR +LSEYGNMSSACVLFILDE+R+KS      TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:    2 ITDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRHILSEYGNMSSACVLFILDEVRRKSAANGHKTTGEGLEWGVLFGFGPGLTVETVVLHSV 97          
The following BLAST results are available for this feature:
BLAST of CV886946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_IPOCO1.305e-4652.81Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSB_IPOTR2.461e-4552.57Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHSC_IPOPU6.701e-4353.61Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI4.803e-4152.76Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHSY_FRAAN2.727e-3675.00Chalcone synthase RJ5 (Fragment) OS=Fragaria anana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886946 ID=CV886946; Name=CV886946; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTCTCAAATTCCCAAGAATTTATGCATAAACACAAAG
CGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGCACGATGCCTTAAA
CTCAATTGACAAAACTAAACCTTCACACGATCAACCAATAACTCAACTGT
GAAAGCATACAACATAAAGTTACTGAACTACTAAACATACTGATGGAGTT
CTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGG
TGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCGCCG
GTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCATCTCGTCAAGGAT
GAACAAGACACAAGCGCTTGACATGTTACCGTACTCACTCAACACTTGAC
GTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTTAGACTCCACTTGG
TCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCA
GTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGGCTTTTCTCTATAT
TCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCG
ACTTCGCGCAAGTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGT
CTGCGAAGTCGACACGAGCTGATACAACGGACGCTCGACCGACGTGTCAG
GATCGGCACCCACGATCACAGCAGCAGCACCATCACCGAACAAAGCCTGG
CCCACAAGAGAATCAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACTGC
CGTGATCTCCGAACAGACAACAAGAACGCGAGCGCCCTTGTTGTTCTC
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