CV886946

Overview
NameCV886946
Unique NameCV886946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_CHRAE (Chalcone synthase OS=Chrysosplenium americanum GN=CHS PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.923e-90
Identity = 167/211 (79.15%), Postives = 181/211 (85.78%), Query Frame = -1
Query:  219 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVE-SXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            ENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DPDT++ERPL++LVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GI+DWNSIFWIAHPGGPAILDQVE           +ATR +LSEYGNMSSACVLFILDEMRKKS    +ATTG+GL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  182 ENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAALIVGADPDTAIERPLFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFKPIGINDWNSIFWIAHPGGPAILDQVEHKLAPGRRANSRATRHILSEYGNMSSACVLFILDEMRKKSARRREATTGDGLEWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.923e-90
Identity = 167/212 (78.77%), Postives = 182/212 (85.85%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE          +ATR V+ EYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  184 ENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.511e-90
Identity = 165/211 (78.20%), Postives = 182/211 (86.26%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+++HLDS+VGQALF           DPD  VERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG +WGVLFGFGPGLTVETVVLHSVPI
Sbjct:  183 ENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGRATTGEGFEWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.280e-90
Identity = 163/213 (76.53%), Postives = 180/213 (84.51%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVLVVCSEITAVTFRGP ++HLDSLVGQALF           DPD S+ERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGI DWNS+FWIAHPGGPAILD VE+         +ATR VLSEYGNMSSACVLFI+DEMRK+S E+   TTGEG+DWGVLFGFGPGLTVETVVLHSVP+ A
Sbjct:  182 ENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGAAAVIIGADPDESIERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEDAFKPLGIDDWNSVFWIAHPGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHTTTGEGMDWGVLFGFGPGLTVETVVLHSVPVTA 394          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.284e-90
Identity = 167/212 (78.77%), Postives = 182/212 (85.85%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EAF PLGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMR+KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  184 ENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.284e-90
Identity = 166/211 (78.67%), Postives = 181/211 (85.78%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+++HLDS+VGQALF           DPD  VE PL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S EE +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  183 ENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGADPDKRVECPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEEGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.595e-90
Identity = 166/211 (78.67%), Postives = 178/211 (84.36%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN GARVLVVCSEITAVTFRGP+++HLDSLVGQALF           DP   VERPL+QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE+         ++TR VL EYGNMSSACVLFILDEMRK S +E  ++TGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  179 ENNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGISDWNSVFWIAHPGGPAILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKSSAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.246e-89
Identity = 164/212 (77.36%), Postives = 181/212 (85.38%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DPD S  E+P++++VS +QTILPDSDGAIDGHLREVG+TFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILD VE          +ATR VLSEYGNMSSACVLFILDEMR+KS+++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  183 ENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDVSAGEKPIFEMVSAAQTILPDSDGAIDGHLREVGITFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSLDDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 394          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.246e-89
Identity = 165/213 (77.46%), Postives = 179/213 (84.04%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVLVVCSEITAVTFRGP ++HLDSLVGQALF           DPD SVERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L EAF PLGI  WNS+FWIAH GGPAILD VE+         +ATR VLSEYGNMSSACVLFI+DEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  182 ENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQALFGDGAAAVIIGADPDLSVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEEAFKPLGIDHWNSVFWIAHQGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.246e-89
Identity = 165/210 (78.57%), Postives = 178/210 (84.76%), Query Frame = -1
Query:  219 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            ENNKGARVLVVCSEITAVTFRGP DTHLDSLVGQALF           DPD + ERPL+++VS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L+ AF+PLGI+DWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFI+DEMRKKS E    TTGEGL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  182 ENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAAAVIVGSDPDLTTERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTTAFSPLGINDWNSIFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFIIDEMRKKSSENGAGTTGEGLEWGVLFGFGPGLTVETVVLHSVP 391          
The following BLAST results are available for this feature:
BLAST of CV886946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_CHRAE1.923e-9079.15Chalcone synthase OS=Chrysosplenium americanum GN=... [more]
CHSY_CARAN1.923e-9078.77Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS2_SORBI2.511e-9078.20Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHS2_SECCE3.280e-9076.53Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHSY_ARATH4.284e-9078.77Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHS7_SORBI4.284e-9078.67Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHSY_PERFR5.595e-9078.67Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHSY_RAPSA1.246e-8977.36Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHS1_HORVU1.246e-8977.46Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS1_GERHY1.246e-8978.57Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_026B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886946 ID=CV886946; Name=CV886946; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTCTCAAATTCCCAAGAATTTATGCATAAACACAAAG
CGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGCACGATGCCTTAAA
CTCAATTGACAAAACTAAACCTTCACACGATCAACCAATAACTCAACTGT
GAAAGCATACAACATAAAGTTACTGAACTACTAAACATACTGATGGAGTT
CTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGG
TGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCGCCG
GTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCATCTCGTCAAGGAT
GAACAAGACACAAGCGCTTGACATGTTACCGTACTCACTCAACACTTGAC
GTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTTAGACTCCACTTGG
TCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCA
GTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGGCTTTTCTCTATAT
TCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCG
ACTTCGCGCAAGTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGT
CTGCGAAGTCGACACGAGCTGATACAACGGACGCTCGACCGACGTGTCAG
GATCGGCACCCACGATCACAGCAGCAGCACCATCACCGAACAAAGCCTGG
CCCACAAGAGAATCAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACTGC
CGTGATCTCCGAACAGACAACAAGAACGCGAGCGCCCTTGTTGTTCTC
back to top