CV886934

Overview
NameCV886934
Unique NameCV886934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886934 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 3.517e-88
Identity = 157/197 (79.70%), Postives = 174/197 (88.32%), Query Frame = 2
Query:  335 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWI 925
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PL ISD+NSIFWI
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWI 197          
BLAST of CV886934 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 6.000e-88
Identity = 160/225 (71.11%), Postives = 186/225 (82.67%), Query Frame = 2
Query:  251 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWI 925
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLTF+L K VP +IS+NI  +LS+AF PLGISD+NSIFWI
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNSIFWI 225          
BLAST of CV886934 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.607e-75
Identity = 138/178 (77.53%), Postives = 154/178 (86.52%), Query Frame = 2
Query:  392 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWI 925
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWI
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWI 177          
BLAST of CV886934 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.315e-62
Identity = 117/144 (81.25%), Postives = 126/144 (87.50%), Query Frame = 2
Query:  494 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWI 925
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+FWI
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWI 144          
BLAST of CV886934 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.043e-23
Identity = 75/273 (27.47%), Postives = 132/273 (48.35%), Query Frame = 2
Query:   44 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIE 862
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I   IE
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIE 3043          
The following BLAST results are available for this feature:
BLAST of CV886934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS6_MEDSA3.517e-8879.70Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
THS2_ARAHY6.000e-8871.11Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS7_MEDSA7.607e-7577.53Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO3.315e-6281.25Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.043e-2327.47Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026A12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886934 ID=CV886934; Name=CV886934; organism=Citrus sinensis; type=EST; length=926bp
ATTCATTAGGGTTCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACG
CTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACG
CCTGCCCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAGGAT
CACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGT
GTGACAAGTCGATGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATT
TTGAAGGAAAACCCCAACATGTGCGCTTACATGGCTCCATCACTCGACGC
ACGTCAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTG
CTACAAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCAC
CTCATCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCA
GCTCACCAAACTGATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGT
ACCAACAAGGATGTTTCGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGAC
TTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGAT
CACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTG
TGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCC
GATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTC
GCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACACTTGCGCG
AAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTTGATCTCA
AAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCAG
CGACTGGAACTCGATATTCTGGATCG
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