CV886900

Overview
NameCV886900
Unique NameCV886900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886900 vs. ExPASy Swiss-Prot
Match: S14L1_HUMAN (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.761e-11
Identity = 51/216 (23.61%), Postives = 102/216 (47.22%), Query Frame = -3
Query:  289 DACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAG---FHDRHGRTVLILRPGMQNTASI------DNQMRHLVYLIENAILNLPE-----GQEQMAW--LIDFTGWSLST--SVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGK 882
            D  + R+L AR++N+DKA++++ ++L WR  ++ + I   E     +  + + AG    HD+ GR + +LR G  +T  +      +  +R+++ + E  +    E     G+   +W  L+D  G ++       +++    I +++ +YPE L    +   PR+F   W +V  F+D  T +K       +      +  Y D+E +P    G+
Sbjct:  277 DEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYIL--ETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSVNEERLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGE 490          
BLAST of CV886900 vs. ExPASy Swiss-Prot
Match: YGR1_SCHPO (CRAL-TRIO domain-containing protein C365.01 OS=Schizosaccharomyces pombe GN=SPBC365.01 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 62/230 (26.96%), Postives = 97/230 (42.17%), Query Frame = -3
Query:  289 LYGRSLQYCS----DACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETG--------KLFRAGFHDRHGRTVLILRPGM----QNTASIDNQMRHLVYLIENAILNLPEGQEQ---MAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPP---RIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGK 912
            LY    + C+    D  L R+L+AR + V  +  ML   + WR     ++     I V GE G         ++     D+ GR ++ L        +NT  ++     ++Y +ENA L L   Q     +  L+D T +S   ++ +  AR      QN+YPE L  A +        +FE  W + KYFLD +   KV F  P        +S Y D + +P    G+
Sbjct:   38 LYVSFFEQCAFDDFDLTLLRFLKARKFVVTDSSDMLANAIVWR-----QQANLRSIMVRGENGLNQNFVKASMYFIWGQDKKGRAIVFLNLHNFIPPKNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRK-NIDLDFARVFAETFQNYYPEILGQALIVGSGFRMALFEGVWSIGKYFLDPEVRSKVTFCKPAQ------VSGYVDSKYIPLSMHGQ 255          
BLAST of CV886900 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 50/216 (23.15%), Postives = 98/216 (45.37%), Query Frame = -3
Query:  292 SDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGM-----------QNTASIDNQMRHLVYLIENAILNL---PEGQEQMAWLIDFTGWSLSTSVPIRSAR----ETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGG 885
            +D  L ++L AR++ V  + +MLE+ L+WR  ++ E++   ++  +   GK+     +D+ G  V     G+            +   ++  +R  V ++E  +  L   P G   +  + D         +P R  R    + +++ Q++YPE +A     N P  F   + +   FL  +T  K KFV  K  ++ E +  +   E++P ++GG
Sbjct:   81 ADVILLKFLRARDFKVADSLRMLEKCLEWREEFKAEKLTEEDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQVTDL------KDMPKRELRVASNQILSLFQDNYPELVATKIFINVPWYFSVIYSMFSPFLTQRT--KSKFVMSKEGNAAETLYKFIRPEDIPVQYGG 288          
The following BLAST results are available for this feature:
BLAST of CV886900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
S14L1_HUMAN2.761e-1123.61SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE... [more]
YGR1_SCHPO6.151e-1126.96CRAL-TRIO domain-containing protein C365.01 OS=Sch... [more]
PATL6_ARATH6.151e-1123.15Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886900 ID=CV886900; Name=CV886900; organism=Citrus sinensis; type=EST; length=947bp
TTTTTTTTTTTTTTTTTGAATAAATATTTTCCTTCGCACAGTAACTATAG
CCCATCGGGAGCATCCGAAGATGATAAATTGATAATGTTGCTAAAATTTT
GATTTCCCTATCATTTATTACAATGATACCAGAGCAGCTCAACTGGCTGG
CTCTGGAGCCACTTCAGCTCCAGAATGCCCATTACCAACGCGTTGCAGTT
TGTCATCAAATCCCCACAATGTTGCTGATTTTGAATCATCTTGAATCATT
AATTTGGAAAACTCTTCATGGTCATAATGCAATGTGGCCTTTCCTCCAAA
CTCAGTCGGAAGATTTTCCTCATCAAAATATGAACTCATGACTTCCACGC
TGTCTTTATTCTTTGGATATACAAATTTCACCTTTTGGAATGTTTTGGCA
TCCAAGAAATACTTGACAACCTTCCAAAATGCTTCAAAAATCCGTGGGGG
ATTGTAGAGAAATGCTATGGCCAGCCTTTCAGGGTAGTGATTTTGTAATA
TATTGATAGTTTCTCGGGCAGACCTGATGGGGACGCTGGTGCTCAATGAC
CACCCAGTGAAGTCTATTAACCATGCCATTTGTTCCTGACCCTCTGGAAG
GTTTAGGATAGCATTCTCTATGAGATAGACTAGGTGTCTCATCTGATTGT
CTATTGATGCAGTGTTCTGCATTCCGGGTCTCAATATGAGAACAGTCCTG
CCATGTCGGTCATGAAAACCAGCTCTAAATAACTTTCCGGTCTCACCTTC
AACTGCAATTTCATTCCAACGGATTTCCTCCGGCCTGTAGGTTGACCTCC
ATTTGAGTGTCTCTTCCAACATTTTCTTTGCTTTGTCCACATTCCAGTTT
CGAGCCTCCAGATATCTCTTCAAGCATGCATCAGAGCAGTACTGCAAACT
ACGTCCATAAAGTGGTCCAATTGCAGCCTTAACCTCCTTGACCTTTG
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