CV886896

Overview
NameCV886896
Unique NameCV886896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886896 vs. ExPASy Swiss-Prot
Match: NOP10_ASHGO (H/ACA ribonucleoprotein complex subunit 3 OS=Ashbya gossypii GN=NOP10 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = -3
Query:  267 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 434
            M+L + +  +G +VYT +K +P+G   +SAHPARFSPDDKYSRQRV LK+RF +LP
Sbjct:    1 MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56          
BLAST of CV886896 vs. ExPASy Swiss-Prot
Match: NOP10_TRYCR (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = -3
Query:  252 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPP 434
            M+LQ YI  NG + YT KK  P G P  SAHPARFSPDDKYSR R+ +K+RF  L ++K P
Sbjct:    1 MHLQVYIV-NGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEKRP 60          
BLAST of CV886896 vs. ExPASy Swiss-Prot
Match: NOP10_CANGA (H/ACA ribonucleoprotein complex subunit 3 OS=Candida glabrata GN=NOP10 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  267 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 434
            M+L + +++ G +VYT KK +  G   +SAHPARFSPDDKYSRQRV LKKR+ LLP
Sbjct:    1 MHLMYTLDNEGKRVYTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56          
BLAST of CV886896 vs. ExPASy Swiss-Prot
Match: NOP10_KLULA (H/ACA ribonucleoprotein complex subunit 3 OS=Kluyveromyces lactis GN=NOP10 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = -3
Query:  267 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 434
            M+L + ++  G ++YT KK +      +SAHPARFSPDDKYSRQRV LKKR+ LLP
Sbjct:    1 MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56          
The following BLAST results are available for this feature:
BLAST of CV886896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NOP10_ASHGO8.347e-1358.93H/ACA ribonucleoprotein complex subunit 3 OS=Ashby... [more]
NOP10_TRYCR1.090e-1259.02H/ACA ribonucleoprotein complex subunit 3-like pro... [more]
NOP10_CANGA1.090e-1260.71H/ACA ribonucleoprotein complex subunit 3 OS=Candi... [more]
NOP10_KLULA1.574e-1157.14H/ACA ribonucleoprotein complex subunit 3 OS=Kluyv... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_025H04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886896 ID=CV886896; Name=CV886896; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTTTTCTTCGAAGAAACTTTTTACTTTATATCCTAGAAG
ACATTAGGATTGCTGGTAACCCAATGGAGTACCAGTTTAATCATACATAT
TTCAACCATTGGTGTAGAGCAGTCCGTTCTACATTAGTAACATTACACAA
TCTTAGGATGATAAATATTAGAAGATTGGAACCTCCAATTTGGAAGAAGC
TTGAAATGATACACCAATAATCTAAGCCTTTAAAACATTTCAGTACTTCG
GAGGAGGTTTCTGTGTTGGCAGAAGACCGAAGCGCTTCTTCAGAAGGACT
CTTTGCCTTGAGTATTTGTCGTCAGGAGAAAAGCGAGCTGGATGAGCAGA
TTGAGCAGGCATTCCCGTTGGCGACTCTTTCTTAGTGGTGTAAACTTTAT
CGCCATTATCGTTAATGTAGAACTGAAGATACATCTTAATCGCTCGCTAA
GCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC
CCCCCCAACCCTTATTTTTTCCCCAAAAGGACAAGAAAAACCTCCCCCGT
TTTTTATTTTTGATTTAAAAAAAAAAGGCCAAAAAGATATTTAATAAAAA
TCTCTTTCTAATTTAAAGAAAAATAACCCCCTTATTTAAATAATTAACCC
CTATTTTCTATCCCCAGTTGCGAAAA
back to top