CV886864

Overview
NameCV886864
Unique NameCV886864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_YERP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.090e-17
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   47 VQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV 376
            + E  EA ALG +  PVL+GP++YL L K  KG  + F  LSL++ I+PVY++V+AEL   G  W+Q DEP L+L+L    L A+  AY  LQ     + +L+ TYF  +
Sbjct:  144 LDEVDEALALGHKIKPVLLGPITYLWLGK-VKG--EQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELPQEWLDAYQPAYQALQGQ---VKLLLTTYFDSI 247          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_PSEU5 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Pseudomonas stutzeri (strain A1501) GN=metE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.090e-17
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 2
Query:    2 ELGPDVNFSYASHKAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKS--FSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF 367
            E   D  F  +  +  +E +EA+ALG    PVL+GP+SYL L K     +++  F  L L+D+++PVY EV+  L A G  W+Q DEP L LDL      AF  AY+ LQ   + L  L+ TYF
Sbjct:  129 EFSVDQQFQLSWTQLFEEVEEAKALGHAIKPVLIGPLSYLWLGKLKGEADQTQTFDKLELLDRLLPVYGEVLDRLAAQGVEWVQIDEPILALDLPQDWKNAFERAYNLLQR--APLKKLVATYF 250          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_SHIBS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:   47 VQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV 376
            ++E  EA ALG    PVL+GPV++L L K  KG  + F  LSL++ I+PVY++V+AEL+  G  W+Q DEP L+L+L    L A+  AY  LQ     + +L+ TYF  V
Sbjct:  144 LEEVDEALALGHNVKPVLLGPVTWLWLGK-VKG--EQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQ---VKLLLTTYFEGV 247          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_SHIB3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:   47 VQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV 376
            ++E  EA ALG    PVL+GPV++L L K  KG  + F  LSL++ I+PVY++V+AEL+  G  W+Q DEP L+L+L    L A+  AY  LQ     + +L+ TYF  V
Sbjct:  144 LEEVDEALALGHNVKPVLLGPVTWLWLGK-VKG--EQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELPQAWLDAYKPAYDALQGQ---VKLLLTTYFEGV 247          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_LISIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria innocua GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 2
Query:   38 HKAVQEYKEAR-ALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF 367
            ++A+  Y+EA+  LG+E  PVLVGPV+YL L K +    +SF +L  +DK IP Y E++ EL+ AGATW+Q DEP L    D  ++  F   Y     ++  L + ++TYF
Sbjct:  137 NRALYYYEEAKNELGIEGKPVLVGPVTYLKLGKGSDA--ESFEIL--LDKFIPAYIEILKELETAGATWVQIDEPYLATSFDKKEIALFEKVYKAFHDAVPNLKIELQTYF 243          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_BIFA0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.035e-17
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 2
Query:   41 KAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSL-SGLNVLIETYFADVPAETYK 394
            K   EY EA++LG+ET PVL+GP ++L LS+ A+  E +     L+D +  VY EV+      GA W+Q DEP L+LD     +  F   YS L  +  SG+ VL+ TYF ++ A+ Y+
Sbjct:  142 KPFDEYLEAKSLGIETKPVLIGPYTFLKLSRDAEAQELTIDE-GLVDAVADVYAEVLRRFAKLGAQWVQLDEPYLVLDKHEGDVSLFKSLYSRLLPARDSGVRVLLNTYFGNI-ADIYE 258          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_PROMH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Proteus mirabilis (strain HI4320) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   20 NFSYASHKAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF 367
            +F+ A  + + E  EA ALG    PVL+GP++YL L K  KG E  F  LSL+D I+PVY++V+++L+  G  W+Q DEP L+LDL      A+  AY  L      + +L+ TYF
Sbjct:  135 SFTLAWQQLLDEVDEALALGHNVKPVLLGPITYLWLGK-VKGPE--FDRLSLLDAILPVYQQVLSQLQQKGIEWVQIDEPALVLDLPIEWQNAYQVAYQALTGQ---VKLLLTTYF 244          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    2 ELGPDVNFSYASHKAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYF 367
            ELGP   F         E  EA AL +   PVL+GP++YL LSK        F  LSL+ K++  Y  ++ +LK  G  W+Q DEP L +DL    L AFS AY  L    SG+ VL+ TYF
Sbjct:  124 ELGPQTTFDGGVEWLFDEIDEALALNLPVKPVLIGPITYLWLSKSHVA---GFDRLSLLPKLVIRYSRLLEKLKQRGIEWVQLDEPALCVDLPVEWLDAFSAAYDVL--GTSGVKVLLATYF 240          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_BURCH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 ELGPDVNFSYASHKAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV 376
            E   D NFS    + +Q+  EA A G+   PV++GPV+YL L K AK V      L+L+ K++PVY  ++  L A G  W+Q DEP L+ +LD+   QAF  AY+ L++    + +L+ TYF  +
Sbjct:  133 EFHADTNFSLDPSRLLQQLAEANAQGVNAKPVILGPVTYLWLGK-AKDVSDR---LALLPKLLPVYGALLDTLTAQGVEWVQIDEPILVTELDAEWRQAFRTAYAALET--RRIKLLLATYFGQL 251          
BLAST of CV886864 vs. ExPASy Swiss-Prot
Match: METE_BURCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-17
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 ELGPDVNFSYASHKAVQEYKEARALGMETVPVLVGPVSYLLLSKPAKGVEKSFSLLSLIDKIIPVYKEVVAELKAAGATWIQFDEPTLILDLDSHKLQAFSDAYSELQSSLSGLNVLIETYFADV 376
            E   D NFS    + +Q+  EA A G+   PV++GPV+YL L K AK V      L+L+ K++PVY  ++  L A G  W+Q DEP L+ +LD+   QAF  AY+ L++    + +L+ TYF  +
Sbjct:  133 EFHADTNFSLDPSRLLQQLAEANAQGVNAKPVILGPVTYLWLGK-AKDVSDR---LALLPKLLPVYGALLDTLTAQGVEWVQIDEPILVTELDAEWRQAFRTAYAALET--RRIKLLLATYFGQL 251          
The following BLAST results are available for this feature:
BLAST of CV886864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
METE_YERP33.090e-1743.645-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PSEU53.090e-1741.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIBS4.035e-1744.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIB34.035e-1744.555-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISIN4.035e-1741.445-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFA04.035e-1740.345-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PROMH5.270e-1742.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP5.270e-1741.805-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCH5.270e-1739.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURCA5.270e-1739.205-methyltetrahydropteroyltriglutamate--homocystein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_025F10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886864 ID=CV886864; Name=CV886864; organism=Citrus sinensis; type=EST; length=400bp
TGAATTGGGACCGGATGTCAACTTCTCTTATGCATCTCACAAGGCTGTTC
AAGAGTATAAGGAAGCCAGAGCTCTTGGCATGGAAACTGTTCCTGTCCTT
GTAGGCCCTGTTTCCTATTTGTTGTTATCTAAACCAGCAAAGGGTGTAGA
GAAATCCTTTTCTCTTCTTTCCCTAATTGACAAGATTATTCCTGTCTACA
AGGAAGTTGTGGCTGAGCTAAAGGCTGCTGGTGCCACCTGGATTCAGTTT
GATGAGCCAACTCTTATCCTGGACCTTGATTCTCACAAATTACAAGCATT
TTCTGATGCATACTCAGAGCTGCAGTCATCGCTATCTGGTTTGAATGTGT
TAATTGAGACGTACTTTGCTGATGTTCCTGCAGAGACATACAAAATACTC
back to top