CV886849

Overview
NameCV886849
Unique NameCV886849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  132 KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            +  R+RPG  ALREIR+YQ ST LL+R+ PF R+VREI   F    D R+                  L ED  LC++HA+RVT+ PKD+QLA
Sbjct:   28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLA 120          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 3
Query:   30 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            T+QT   ++     R+    K +R++ P  G  KK +R+RPGTVAL+EIR +QK T LLI    F R VR I          R+                 GLF D+ LCAIHA+RVT+M KD +LA
Sbjct:   45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELA 168          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  126 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401
            V K  R+RPG  AL EIRKYQK+ +LLI+K PF RLVREI Q    F  D R                   +FE ++L + HAKRVT+M  DIQL
Sbjct:  185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQL 279          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 3
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 143
            MAR KQTARKSTG +APRKQLA+KAARKSAPATGG+KKPHR
Sbjct:    1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 47/86 (54.65%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 275
            MAR K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD KT LRF
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRF 76          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 52/127 (40.94%), Postives = 63/127 (49.61%), Query Frame = 3
Query:   45 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            R+S   +APR++      T    +  P+ G     H R R G   L+EIRK QKST LLIRKLPF RL REI   F    D  +                  LFED  L  +HA RVT+ PKD+QLA
Sbjct:    5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLA 129          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3
Query:   69 PRKQLATKAARKSAPATGGVKKPHRFRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401
            PR++  T   R S+P  G  ++  R  PG     + L+EI+K Q+ST+LL+RKLPF R+VREI   F    DL +                  LFED  L  +HA RVTI PKDIQL
Sbjct:    3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQL 117          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  126 VKKPH--RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREI--AQDFKT-DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401
            V K H  +FRPG  AL EIRKYQKST++LI+K PF RLV EI   Q +K+ D R                   +FE + L   HAKRVT+MP DIQL
Sbjct:  239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQL 335          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  126 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401
            + K  R+RPG  AL EIRKYQ+S +LLI K PF RLVREI Q    F +DLR                   +F+ ++L + H+KR T+   D+QL
Sbjct:  158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQL 252          
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 49/131 (37.40%), Postives = 63/131 (48.09%), Query Frame = 3
Query:   18 KMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            +  R  +T R+     AP       AA +  P+ G   +P   R  TV L+EIR  QK+T LL+RK PF RL REI   F    D  +                  LFED  L ++HA RVT+ PKD+QLA
Sbjct:    5 RQKRKPETPRRRPASPAP-------AAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLA 127          
The following BLAST results are available for this feature:
BLAST of CV886849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
CENPA_CHICK3.450e-1446.24Histone H3-like centromeric protein A OS=Gallus ga... [more]
HTR12_ARATH1.004e-1340.16Histone H3-like centromeric protein HTR12 OS=Arabi... [more]
HCP3_CAEEL1.004e-1347.37Histone H3-like centromeric protein hcp-3 OS=Caeno... [more]
H32_TETBO1.712e-1387.80Histone H3.2 (Fragment) OS=Tetrahymena borealis PE... [more]
H3L2_LILLO4.982e-1354.65Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]
CENPA_HUMAN8.498e-1340.94Histone H3-like centromeric protein A OS=Homo sapi... [more]
CENPA_CRIGR8.498e-1341.88Histone H3-like centromeric protein A OS=Cricetulu... [more]
HCP3L_CAEBR1.450e-1248.45Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
HCP3L_CAEEL3.229e-1242.11Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
CENPA_BOVIN9.395e-1237.40Histone H3-like centromeric protein A OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025F01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886849 ID=CV886849; Name=CV886849; organism=Citrus sinensis; type=EST; length=682bp
GAAACAAACACTTTCACAAAATGGCCCGCACGAAGCAGACAGCAAGGAAG
TCCACTGGAGGAAAGGCACCACGTAAGCAGCTGGCCACCAAGGCAGCTCG
GAAGTCTGCTCCGGCGACGGGAGGAGTGAAGAAACCACACCGTTTCAGGC
CGGGAACAGTGGCTTTGAGAGAGATCAGGAAGTACCAGAAGAGCACTGAG
CTTCTGATAAGGAAGCTTCCGTTCCAGAGGCTCGTTAGGGAAATCGCTCA
GGACTTTAAGACCGATCTGAGGTTCCAAAGCAGCGCTGTCGCGGCTCTTC
AAGAAGCTGCCGAGGCTTATCTGGTGGGTCTCTTTGAAGACACCAATCTC
TGTGCTATTCACGCTAAGAGGGTCACCATCATGCCTAAAGATATCCAGCT
TGCAAGGAGAATCAGAGGCGAGAGGGCTTGAATAATAATATGACACATGT
AAATATTTTAATGGGTTGTTTTTGTTGTTAGGGTTTGCTTTTGAGATGTT
GATATGTAATGGATCATTTTGGAAATCTTATGTAATGTACTGTTTTTTTT
TTTTTTTTTGGCCCTTTGGAGGTTGGGTTTAGACGTTTAGATTGTGCCTT
CCAGGTGCTTGTGAAAATGTCTGTTGAATGTTAGAAGTCCTATTTTAGAA
AAAATGAATTATTGGGCAGTTTCATTTGCTTA
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