CV886849
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_CHICK (Histone H3-like centromeric protein A OS=Gallus gallus GN=CENPA PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14 Identity = 43/93 (46.24%), Postives = 55/93 (59.14%), Query Frame = 3 Query: 132 KPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404 + R+RPG ALREIR+YQ ST LL+R+ PF R+VREI F D R+ L ED LC++HA+RVT+ PKD+QLA Sbjct: 28 RARRYRPGQRALREIRRYQSSTALLLRRQPFARVVREICLLFTRGVDYRWQAMALLALQEAAEAFLVHLLEDAYLCSLHARRVTLYPKDLQLA 120
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HTR12_ARATH (Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=2 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 3 Query: 30 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404 T+QT ++ R+ K +R++ P G KK +R+RPGTVAL+EIR +QK T LLI F R VR I R+ GLF D+ LCAIHA+RVT+M KD +LA Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLMRKDFELA 168
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3_CAEEL (Histone H3-like centromeric protein hcp-3 OS=Caenorhabditis elegans GN=hcp-3 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 3 Query: 126 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401 V K R+RPG AL EIRKYQK+ +LLI+K PF RLVREI Q F D R +FE ++L + HAKRVT+M DIQL Sbjct: 185 VTKTRRYRPGQKALEEIRKYQKTEDLLIQKAPFARLVREIMQTSTPFGADCRIRSDAISALQEAAEAFLVEMFEGSSLISTHAKRVTLMTTDIQL 279
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H32_TETBO (Histone H3.2 (Fragment) OS=Tetrahymena borealis PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13 Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 3 Query: 21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR 143 MAR KQTARKSTG +APRKQLA+KAARKSAPATGG+KKPHR Sbjct: 1 MARAKQTARKSTGAEAPRKQLASKAARKSAPATGGIKKPHR 41
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 47/86 (54.65%), Postives = 51/86 (59.30%), Query Frame = 3 Query: 21 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 275 MAR K TAR STGGKAPRKQLA+KA RK+ P T GVK+P G RKLPFQ LVR+I QD KT LRF Sbjct: 1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRF 76
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_HUMAN (Histone H3-like centromeric protein A OS=Homo sapiens GN=CENPA PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 52/127 (40.94%), Postives = 63/127 (49.61%), Query Frame = 3 Query: 45 RKSTGGKAPRKQ----LATKAARKSAPATGGVKKPH-RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404 R+S +APR++ T + P+ G H R R G L+EIRK QKST LLIRKLPF RL REI F D + LFED L +HA RVT+ PKD+QLA Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLA 129
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_CRIGR (Histone H3-like centromeric protein A OS=Cricetulus griseus GN=CENPA PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3 Query: 69 PRKQLATKAARKSAPATGGVKKPHRFRPGT----VALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401 PR++ T R S+P G ++ R PG + L+EI+K Q+ST+LL+RKLPF R+VREI F DL + LFED L +HA RVTI PKDIQL Sbjct: 3 PRRKPRTPRRRPSSPVPGPSRRSSR--PGKRRKFLWLKEIKKLQRSTDLLLRKLPFSRVVREICGKFTRGVDLCWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTIFPKDIQL 117
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEBR (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis briggsae GN=cpar-1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 47/97 (48.45%), Postives = 56/97 (57.73%), Query Frame = 3 Query: 126 VKKPH--RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREI--AQDFKT-DLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401 V K H +FRPG AL EIRKYQKST++LI+K PF RLV EI Q +K+ D R +FE + L HAKRVT+MP DIQL Sbjct: 239 VTKTHNRKFRPGQKALAEIRKYQKSTDMLIQKAPFVRLVHEIIREQTYKSQDYRIRADALMALQEAAEAFMVEMFEGSVLICNHAKRVTLMPTDIQL 335
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12 Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3 Query: 126 VKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 401 + K R+RPG AL EIRKYQ+S +LLI K PF RLVREI Q F +DLR +F+ ++L + H+KR T+ D+QL Sbjct: 158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINALQEASEALLVQMFDGSSLISAHSKRATLTTTDVQL 252
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: CENPA_BOVIN (Histone H3-like centromeric protein A OS=Bos taurus GN=CENPA PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12 Identity = 49/131 (37.40%), Postives = 63/131 (48.09%), Query Frame = 3 Query: 18 KMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404 + R +T R+ AP AA + P+ G +P R TV L+EIR QK+T LL+RK PF RL REI F D + LFED L ++HA RVT+ PKD+QLA Sbjct: 5 RQKRKPETPRRRPASPAP-------AAPRPTPSLGTSSRPLARRRHTV-LKEIRTLQKTTHLLLRKSPFCRLAREICVQFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLSLHAGRVTLFPKDVQLA 127 The following BLAST results are available for this feature:
BLAST of CV886849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 210
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886849 ID=CV886849; Name=CV886849; organism=Citrus sinensis; type=EST; length=682bpback to top |