CV886849

Overview
NameCV886849
Unique NameCV886849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_CAPAN (Histone H3.3 OS=Capsicum annuum PE=2 SV=3)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
[Close]
BLAST of CV886849 vs. ExPASy Swiss-Prot
Match: H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 109/128 (85.16%), Postives = 110/128 (85.94%), Query Frame = 3 
Query:   21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLA 404
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128
The following BLAST results are available for this feature:
BLAST of CV886849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
H33_PINPS5.817e-5485.16Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ5.817e-5485.16Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI5.817e-5485.16Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO5.817e-5485.16Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA5.817e-5485.16Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE5.817e-5485.16Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU5.817e-5485.16Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI5.817e-5485.16Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]
H33_CAPAN5.817e-5485.16Histone H3.3 OS=Capsicum annuum PE=2 SV=3[more]
H33_ARATH5.817e-5485.16Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025F01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886849 ID=CV886849; Name=CV886849; organism=Citrus sinensis; type=EST; length=682bp
GAAACAAACACTTTCACAAAATGGCCCGCACGAAGCAGACAGCAAGGAAG
TCCACTGGAGGAAAGGCACCACGTAAGCAGCTGGCCACCAAGGCAGCTCG
GAAGTCTGCTCCGGCGACGGGAGGAGTGAAGAAACCACACCGTTTCAGGC
CGGGAACAGTGGCTTTGAGAGAGATCAGGAAGTACCAGAAGAGCACTGAG
CTTCTGATAAGGAAGCTTCCGTTCCAGAGGCTCGTTAGGGAAATCGCTCA
GGACTTTAAGACCGATCTGAGGTTCCAAAGCAGCGCTGTCGCGGCTCTTC
AAGAAGCTGCCGAGGCTTATCTGGTGGGTCTCTTTGAAGACACCAATCTC
TGTGCTATTCACGCTAAGAGGGTCACCATCATGCCTAAAGATATCCAGCT
TGCAAGGAGAATCAGAGGCGAGAGGGCTTGAATAATAATATGACACATGT
AAATATTTTAATGGGTTGTTTTTGTTGTTAGGGTTTGCTTTTGAGATGTT
GATATGTAATGGATCATTTTGGAAATCTTATGTAATGTACTGTTTTTTTT
TTTTTTTTTGGCCCTTTGGAGGTTGGGTTTAGACGTTTAGATTGTGCCTT
CCAGGTGCTTGTGAAAATGTCTGTTGAATGTTAGAAGTCCTATTTTAGAA
AAAATGAATTATTGGGCAGTTTCATTTGCTTA
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