CV886841

Overview
NameCV886841
Unique NameCV886841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 85/248 (34.27%), Postives = 108/248 (43.55%), Query Frame = 3
Query:  156 RKTAPK-KSKQSSGSS----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            RKTA K K   +SGS     DR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE    L++ E+K  RLAM++  GF VQA+V
Sbjct:   33 RKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIV 233          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 84/248 (33.87%), Postives = 106/248 (42.74%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSS-----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            RK   KKS  +S  S     DR L+      + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+V
Sbjct:   46 RKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIV 246          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 84/252 (33.33%), Postives = 106/252 (42.06%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            RKT  K    SSGS     WY             +AP +L G   GDYG+D  GL   PA +            AKN                                R+ E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+V
Sbjct:   35 RKTVTKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATF------------AKN--------------------------------RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIV 234          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16
Identity = 83/251 (33.07%), Postives = 106/251 (42.23%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            RKT  K+   SSGS     WY             + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+V
Sbjct:   34 RKTVTKQV--SSGSP----WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 231          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16
Identity = 74/215 (34.42%), Postives = 96/215 (44.65%), Query Frame = 3
Query:  234 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   +YPGG F DPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+V
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16
Identity = 84/278 (30.22%), Postives = 116/278 (41.73%), Query Frame = 3
Query:   84 FIGTRLPDIYSNSGRIQARFG-FGKRKTAPKKS---KQSSGSSDRPLWYP---------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            F G +L  +   + ++    G  G+ +   +K+   K  + S D P + P           + P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+V
Sbjct:   16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIV 246          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 77/243 (31.69%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+V
Sbjct:   36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 77/243 (31.69%), Postives = 106/243 (43.62%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+V
Sbjct:   36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 78/243 (32.10%), Postives = 104/243 (42.80%), Query Frame = 3
Query:  156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            R+T     +      DRP +      + P +L G   GDYG+D  GL    E             A+N                                RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+V
Sbjct:   38 RRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233          
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 60/148 (40.54%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  441 QRFRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827
            +R+RE ELIH R  +L  LG +T E L             W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+V
Sbjct:   99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIV 242          
The following BLAST results are available for this feature:
BLAST of CV886841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB22_MAIZE6.114e-1734.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY7.985e-1733.87Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_PETSP1.043e-1633.33Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_SOYBN1.779e-1633.07Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_GOSHI1.779e-1634.42Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_PYRPY3.034e-1630.22Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_ORYSJ3.963e-1631.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.963e-1631.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC6.759e-1632.10Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2_DUNSA1.506e-1540.54Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025E09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886841 ID=CV886841; Name=CV886841; organism=Citrus sinensis; type=EST; length=827bp
TTTCAATCAACACTACACACCCCACCGTAAGTTAGCCACAAGCCATGGCC
TCAACCACAGCAGCAGCAGCCGCCACATCATCTTTCATTGGCACCCGCCT
CCCCGACATTTACTCAAACTCGGGCCGTATCCAAGCCCGGTTCGGCTTCG
GAAAGAGAAAAACAGCACCCAAAAAGTCGAAACAGTCTTCCGGATCCTCT
GATCGTCCACTTTGGTACCCAGGAGCCAAGGCACCCGAGTGGCTCGACGG
GAGCTTGGTGGGTGACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAG
CGGAGTACTTGCAGTATGACTATGACTCGTTGGACCAGAACTTGGCTAAG
AACCCGGCTGGCGATATTATTGGGACGAGGATTGAGGCCTCTGACATGCA
GTCCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCA
CCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTC
CTTGGCTTCGCTGTCCAAGCTGTTGTC
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