CV886841
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17 Identity = 85/248 (34.27%), Postives = 108/248 (43.55%), Query Frame = 3 Query: 156 RKTAPK-KSKQSSGSS----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 RKTA K K +SGS DR L+ + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE L++ E+K RLAM++ GF VQA+V Sbjct: 33 RKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIV 233
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17 Identity = 84/248 (33.87%), Postives = 106/248 (42.74%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSS-----DRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 RK KKS +S S DR L+ + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP+ A L++ EIK+ RLAM + GF VQA+V Sbjct: 46 RKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIV 246
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16 Identity = 84/252 (33.33%), Postives = 106/252 (42.06%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 RKT K SSGS WY +AP +L G GDYG+D GL PA + AKN R+ E+IH RW ML LG + E G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+V Sbjct: 35 RKTVTKAKPVSSGSP----WYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATF------------AKN--------------------------------RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIV 234
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16 Identity = 83/251 (33.07%), Postives = 106/251 (42.23%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRPLWYP----------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 RKT K+ SSGS WY + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+V Sbjct: 34 RKTVTKQV--SSGSP----WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 231
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16 Identity = 74/215 (34.42%), Postives = 96/215 (44.65%), Query Frame = 3 Query: 234 PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G++E R LDP +YPGG F DPLGLA DP+ A L++ EIK+ RLAM + GF VQA+V Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDP---IYPGGAF-DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.034e-16 Identity = 84/278 (30.22%), Postives = 116/278 (41.73%), Query Frame = 3 Query: 84 FIGTRLPDIYSNSGRIQARFG-FGKRKTAPKKS---KQSSGSSDRPLWYP---------GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 F G +L + + ++ G G+ + +K+ K + S D P + P + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP+ A +++ EIK+ RLAM + GF VQA+V Sbjct: 16 FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIV 246
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16 Identity = 77/243 (31.69%), Postives = 106/243 (43.62%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 R+T + DRP + + P +L G GDYG+D GL E A+N RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+V Sbjct: 36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16 Identity = 77/243 (31.69%), Postives = 106/243 (43.62%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 R+T + DRP + + P +L G GDYG+D GL E A+N RE E+IH RWAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+V Sbjct: 36 RRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16 Identity = 78/243 (32.10%), Postives = 104/243 (42.80%), Query Frame = 3 Query: 156 RKTAPKKSKQSSGSSDRPLWYP--GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 R+T + DRP + + P +L G GDYG+D GL E A+N RE E+IH RWAML LG + E L+ G+ W AG EG YLG P +++ + +V+++G IE R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+V Sbjct: 38 RRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
BLAST of CV886841 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15 Identity = 60/148 (40.54%), Postives = 80/148 (54.05%), Query Frame = 3 Query: 441 QRFRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVV 827 +R+RE ELIH R +L LG +T E L W AG +G +YLG P +I + ++V+++G +E R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLAM A LGF VQA+V Sbjct: 99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIV 242 The following BLAST results are available for this feature:
BLAST of CV886841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886841 ID=CV886841; Name=CV886841; organism=Citrus sinensis; type=EST; length=827bpback to top |