CV886819

Overview
NameCV886819
Unique NameCV886819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.297e-30
Identity = 74/172 (43.02%), Postives = 105/172 (61.05%), Query Frame = -2
Query:  337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852
            V+H+A++  + N+R+GT +  TR EVRGGGRKP+ QK TGRAR+GS R P    GGVVF  KPRD+SI + KK KRL             N IV++ +D    + KTKE +  ++  GL+  QKA  ++ E +E ++KS++NI  +K L    LN+FDIL  +  V+    V
Sbjct:   32 VLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNEYLQKSTKNIPEVKTLQVGNLNVFDILKYDKFVILQDAV 200          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_MOOTA (50S ribosomal protein L4 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplD PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.329e-30
Identity = 73/191 (38.22%), Postives = 112/191 (58.64%), Query Frame = -2
Query:  337 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 909
            ++GE  LD      +   AV+H A++  + ++RRGTA+T    +V GGGRKP+ QK TGRAR GS R+PL  GG V+FGP+PRD+  ++ KK +RL             N IV++E   K E+P+TK+    ++   L+ + KA  +      NVE S+RN+  ++ LT   +N++D+L  + LV+T   V
Sbjct:   13 QVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNIIVLDEL--KMEKPRTKDMAHILK--NLNAENKALVVTATREPNVELSARNLPGVRFLTSDGINVYDLLAHDKLVITKDAV 199          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.572e-30
Identity = 66/172 (38.37%), Postives = 105/172 (61.05%), Query Frame = -2
Query:  337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852
            ++H+ ++    ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR   +K+NKKE++L             N  +++  +   + PKTK F    +   ++  QK   +V E +  ++ ++RNI  ++++    LN F +L A+ +++TP  V
Sbjct:   37 LIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGEKTIPLKLATRNIKNVELILASNLNTFSLLKAKQILMTPLAV 206          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CLOPH (50S ribosomal protein L4 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplD PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.250e-29
Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = -2
Query:  337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852
            ++H A+++ + NKR+GT S  TR EV GGGRKP+ QK TG AR+GS R+P   GGGVVF PKPRD+S K+N+KEK L           A+  IV++  +   +  KTK+F   +    ++   KA  ++ +  ENV  S+RNI T++  T   +N++DI+  +TLV+T   V
Sbjct:   32 LMHMAVVSQLANKRQGTQSAKTRAEVSGGGRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKLIVLDSMN--MDEIKTKKFKAVLENLKVN---KALVVLDKKDENVILSARNIPTVRTATSNAINVYDIVKYDTLVITKDAV 198          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.132e-29
Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = -2
Query:  337 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 909
            ++GE  L           AV+H  ++  + N+R+GT  T TR EVRGGGRKP+ QK TGRAR G+ R+P+  GGG+VFGP PRD+S ++ KK KRL           A   +V++  +     PKTKE    +    L   + A  +  E + NVEKS+RN+  +K L  R LN++D+L+   L++T   V
Sbjct:   13 QVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDAGRILVLDALE--LPGPKTKEMARILA--NLKAGEGALVVTAERNVNVEKSARNLPGVKSLEARQLNVYDLLNHPHLIITRDAV 199          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.132e-29
Identity = 66/158 (41.77%), Postives = 100/158 (63.29%), Query Frame = -2
Query:  352 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 825
            M N+R+GT     R EVRGGGRKPY QK TG AR+GS R+PL  GGG +FGP+PRD+ +K+NKK K+L               +VVE+F   F++ KT++  E ++  GLD  +K   L+ E ++ + +S RNI  L+++     + +DILD++T+++
Sbjct:   41 MANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLD-SRKTLMLMPEHNDIIVRSGRNIPKLQVVVADNASTYDILDSQTVLV 195          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.785e-29
Identity = 71/187 (37.97%), Postives = 112/187 (59.89%), Query Frame = -2
Query:  349 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 909
            K G+  L+      +    VV  A++    + R+GT +   R  VRGGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR ++  I KK +RL            E+ +VV+EF  KFE PKTK+F +++    +D  +KA  ++ E +E+   ++RN+  +K++ P  +N+ DI++++ LV+T
Sbjct:   13 KNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGINVLDIMNSDKLVIT 195          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.785e-29
Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = -2
Query:  337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852
            V+H+A++  + N+R+GT +  TR EVRGGGRKP+ QK TGRAR+GS R P    GGVVF  KPRD+SI + KK +RL             N IV++++D    + +TKE I  ++  GL+  +KA  ++ E +E ++KS++NI  +K L    LN+FDIL  +  ++    V
Sbjct:   32 VLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNLIVLDKWD--MNQYRTKEVIRVLKNLGLE-NEKALIVIPEKNEYLQKSTKNIPEVKTLQVGNLNVFDILKYDKFIILQDAV 200          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.637e-29
Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = -2
Query:  322 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG 909
            K+ E  L+      +   AV++  +   M ++R GTA+T  R +V GGG+KP+ QK TGRAR G++R+P+  GGG+VFGP PRD+   + KK ++             +  +V+++F    +  KTK+F E + R+GL   +KA F+  E +E +EKSSRNI  +KM+    LN++D+L+ E LV+    V  L G
Sbjct:   23 KVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVIIEPAVKKLEG 213          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.637e-29
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = -2
Query:  337 VHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 849
            ++  +   + N+R+GT S  TR EVRGGGRKP+ QK TGRAR GS R+PL  GGG+VF PKPRD+S  I KK +RL           +   IV++E   K + PKTKE +  ++   +D  +KA  ++ E SE V KS+ NI  ++     T+N++DIL  + L++T   V
Sbjct:   33 MYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVD--KKALIVMGEKSEAVIKSANNIQGVQTALVNTINVYDILKYDKLIITKDAV 199          
The following BLAST results are available for this feature:
BLAST of CV886819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_ANATD4.297e-3043.0250S ribosomal protein L4 OS=Anaerocellum thermophi... [more]
RL4_MOOTA7.329e-3038.2250S ribosomal protein L4 OS=Moorella thermoacetica... [more]
RK4_ODOSI9.572e-3038.3750S ribosomal protein L4, chloroplastic OS=Odontel... [more]
RL4_CLOPH1.250e-2941.8650S ribosomal protein L4 OS=Clostridium phytoferme... [more]
RL4_DESAP2.132e-2939.2750S ribosomal protein L4 OS=Desulforudis audaxviat... [more]
RL4_CHLPB2.132e-2941.7750S ribosomal protein L4 OS=Chlorobium phaeobacter... [more]
RL4_PEDPA2.785e-2937.9750S ribosomal protein L4 OS=Pediococcus pentosaceu... [more]
RL4_CALS82.785e-2941.2850S ribosomal protein L4 OS=Caldicellulosiruptor s... [more]
RL4_SYNAS3.637e-2937.7650S ribosomal protein L4 OS=Syntrophus aciditrophi... [more]
RL4_ALKOO3.637e-2942.1150S ribosomal protein L4 OS=Alkaliphilus oremlandi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886819 ID=CV886819; Name=CV886819; organism=Citrus sinensis; type=EST; length=910bp
CGTACATCTGCATATATTTTTAACATAGAGGAGCAAGTTCAAGAATACAA
AAAAGATTGACATACTAATATACCAAAAACTAGGCTTGATCGAGCTACAG
CCTGCAACATTACACAATTGTTGGCTTAGGCATTTTAAAGAAAAAAAAAA
TCTTTATAATCAAGTGTGTCGCAATAAAATGGATCCTAGGTCAATCAAGG
CGAAAACTTGCCACAAGACTCTGAATCATTATTCTGCTGCATCACTTTCC
TCCCCTGCCTCCCTCGCTTCACTCTCTTCTTCTTCTTCATCGCCATCTCC
CTCGAACTCGACCCCATACCTGCCATTCAGGAAATCAACAGTTGACGGCG
TCAACACCAGCGTCTCCGCATCCAAAATATCAAACAAATTCAATGTCCTC
GGCGTTAACATCTTCAAAGTCCCAATATTCCTACTCGATTTCTCCACATT
CTCGCTCACCTCCATCACCAAGAACGTCGCTTTCTGCTTCGGGTCCAAAC
CCCACCTCCTCATCGCCTCAATAAACTCCTTCGTCTTCGGCCTCTCAAAC
TTCCCATCAAATTCCTCCACCACAATCGTGTTCTCCGCCGCCGCGGCGCT
CGCTATCGCCGTCGAAATCGCCAGCCGCTTCTCCTTCTTGTTTATCTTAA
TCGACCAGTCCCTCGGCTTGGGTCCAAAAACGACGCCTCCTCCGGGCCGA
AGTGGGGTCCTGTTCGATCCGCGACGAGCCCTACCCGTTTTCTTTTGAGA
GTAGGGTTTCCGTCCCCCACCTCTTACCTCCCCGCGCGTGAGAGTCGACG
CGGTGCCGCGTCGCTTGTTCTGCATGTCGGTGATCAACGCCCGGTGGACA
ACCGCACGCGCTGTGTCGGGTGCGGCCGACTTTAGGTCGAGGTATGTCTC
GCCGATTTTT
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