CV886819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANATD (50S ribosomal protein L4 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplD PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.297e-30 Identity = 74/172 (43.02%), Postives = 105/172 (61.05%), Query Frame = -2 Query: 337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852 V+H+A++ + N+R+GT + TR EVRGGGRKP+ QK TGRAR+GS R P GGVVF KPRD+SI + KK KRL N IV++ +D + KTKE + ++ GL+ QKA ++ E +E ++KS++NI +K L LN+FDIL + V+ V Sbjct: 32 VLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNLIVLDRWD--MNQYKTKEVLRVLKNLGLE-NQKALIVIPEKNEYLQKSTKNIPEVKTLQVGNLNVFDILKYDKFVILQDAV 200
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_MOOTA (50S ribosomal protein L4 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplD PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.329e-30 Identity = 73/191 (38.22%), Postives = 112/191 (58.64%), Query Frame = -2 Query: 337 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 909 ++GE LD + AV+H A++ + ++RRGTA+T +V GGGRKP+ QK TGRAR GS R+PL GG V+FGP+PRD+ ++ KK +RL N IV++E K E+P+TK+ ++ L+ + KA + NVE S+RN+ ++ LT +N++D+L + LV+T V Sbjct: 13 QVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNIIVLDEL--KMEKPRTKDMAHILK--NLNAENKALVVTATREPNVELSARNLPGVRFLTSDGINVYDLLAHDKLVITKDAV 199
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.572e-30 Identity = 66/172 (38.37%), Postives = 105/172 (61.05%), Query Frame = -2 Query: 337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852 ++H+ ++ ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL GGGV+FGPKPR +K+NKKE++L N +++ + + PKTK F + ++ QK +V E + ++ ++RNI ++++ LN F +L A+ +++TP V Sbjct: 37 LIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGEKTIPLKLATRNIKNVELILASNLNTFSLLKAKQILMTPLAV 206
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CLOPH (50S ribosomal protein L4 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplD PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.250e-29 Identity = 72/172 (41.86%), Postives = 106/172 (61.63%), Query Frame = -2 Query: 337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852 ++H A+++ + NKR+GT S TR EV GGGRKP+ QK TG AR+GS R+P GGGVVF PKPRD+S K+N+KEK L A+ IV++ + + KTK+F + ++ KA ++ + ENV S+RNI T++ T +N++DI+ +TLV+T V Sbjct: 32 LMHMAVVSQLANKRQGTQSAKTRAEVSGGGRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKLIVLDSMN--MDEIKTKKFKAVLENLKVN---KALVVLDKKDENVILSARNIPTVRTATSNAINVYDIVKYDTLVITKDAV 198
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_DESAP (50S ribosomal protein L4 OS=Desulforudis audaxviator (strain MP104C) GN=rplD PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.132e-29 Identity = 75/191 (39.27%), Postives = 108/191 (56.54%), Query Frame = -2 Query: 337 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 909 ++GE L AV+H ++ + N+R+GT T TR EVRGGGRKP+ QK TGRAR G+ R+P+ GGG+VFGP PRD+S ++ KK KRL A +V++ + PKTKE + L + A + E + NVEKS+RN+ +K L R LN++D+L+ L++T V Sbjct: 13 QVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGGGRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDAGRILVLDALE--LPGPKTKEMARILA--NLKAGEGALVVTAERNVNVEKSARNLPGVKSLEARQLNVYDLLNHPHLIITRDAV 199
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CHLPB (50S ribosomal protein L4 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplD PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.132e-29 Identity = 66/158 (41.77%), Postives = 100/158 (63.29%), Query Frame = -2 Query: 352 MQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVL 825 M N+R+GT R EVRGGGRKPY QK TG AR+GS R+PL GGG +FGP+PRD+ +K+NKK K+L +VVE+F F++ KT++ E ++ GLD +K L+ E ++ + +S RNI L+++ + +DILD++T+++ Sbjct: 41 MANRRQGTHKAKNRSEVRGGGRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANEGGIVVVEDF--VFDQIKTRQMAEVLKNLGLD-SRKTLMLMPEHNDIIVRSGRNIPKLQVVVADNASTYDILDSQTVLV 195
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.785e-29 Identity = 71/187 (37.97%), Postives = 112/187 (59.89%), Query Frame = -2 Query: 349 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 909 K G+ L+ + VV A++ + R+GT + R VRGGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR ++ I KK +RL E+ +VV+EF KFE PKTK+F +++ +D +KA ++ E +E+ ++RN+ +K++ P +N+ DI++++ LV+T Sbjct: 13 KNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGINVLDIMNSDKLVIT 195
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CALS8 (50S ribosomal protein L4 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplD PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.785e-29 Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = -2 Query: 337 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 852 V+H+A++ + N+R+GT + TR EVRGGGRKP+ QK TGRAR+GS R P GGVVF KPRD+SI + KK +RL N IV++++D + +TKE I ++ GL+ +KA ++ E +E ++KS++NI +K L LN+FDIL + ++ V Sbjct: 32 VLHQAVVAHLANRRQGTFAAKTRAEVRGGGRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNLIVLDKWD--MNQYRTKEVIRVLKNLGLE-NEKALIVIPEKNEYLQKSTKNIPEVKTLQVGNLNVFDILKYDKFIILQDAV 200
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_SYNAS (50S ribosomal protein L4 OS=Syntrophus aciditrophicus (strain SB) GN=rplD PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.637e-29 Identity = 74/196 (37.76%), Postives = 115/196 (58.67%), Query Frame = -2 Query: 322 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNG 909 K+ E L+ + AV++ + M ++R GTA+T R +V GGG+KP+ QK TGRAR G++R+P+ GGG+VFGP PRD+ + KK ++ + +V+++F + KTK+F E + R+GL +KA F+ E +E +EKSSRNI +KM+ LN++D+L+ E LV+ V L G Sbjct: 23 KVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGGGKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQGQKLVVLKDF--PLDEIKTKKFKEVVDRFGL---KKALFVTEERNEFLEKSSRNIAGIKMVRSEGLNVYDVLNHEHLVIIEPAVKKLEG 213
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.637e-29 Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = -2 Query: 337 VHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTV 849 ++ + + N+R+GT S TR EVRGGGRKP+ QK TGRAR GS R+PL GGG+VF PKPRD+S I KK +RL + IV++E K + PKTKE + ++ +D +KA ++ E SE V KS+ NI ++ T+N++DIL + L++T V Sbjct: 33 MYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVD--KKALIVMGEKSEAVIKSANNIQGVQTALVNTINVYDILKYDKLIITKDAV 199 The following BLAST results are available for this feature:
BLAST of CV886819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886819 ID=CV886819; Name=CV886819; organism=Citrus sinensis; type=EST; length=910bpback to top |