EY665621

Overview
NameEY665621
Unique NameEY665621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.121e-38
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFIT D + YMFKYD+VHG +KHHELK KD KTLLFG+KPV VFG+RNP EIPWAETGAEYVV+STGVFT               VIISAPSKDAPMF VGVNE  Y P
Sbjct:   35 DPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTP 144          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.913e-38
Identity = 77/109 (70.64%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITTD +TYMFKYD+VHG WKHHE+K KD KTLLFGEK V VFG RNP EIPWA  GAEYVV+STGVFT               VIISAPSKDAPMF  GVNE EYK
Sbjct:    3 DPFITTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYK 111          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.262e-38
Identity = 75/109 (68.81%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFI+TD +TYMFKYD+VHG WKHHE+K KD KTLLFGEK V VFG RNP EIPW   GAEYVV+STGVFT               V+ISAPSKDAPMF VGVNE EYK
Sbjct:   35 DPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK 143          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.262e-38
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFITTD +TYMFKYD+VHG WKH ++  KD KTLLFGEKPVTVFG+RNP EIPW E GAEYVV+STGVFT               V+ISAPSKDAPMF VGVNE++Y
Sbjct:   35 DPFITTDYMTYMFKYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.566e-38
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFITTD +TYMFKYD+VHG WKH ++K KD KTLL GEKPVTVFG+RNP EIPWAE GAEYVV+STGVFT               V+ISAPSKDAPMF  GVNE++Y
Sbjct:   35 DPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.566e-38
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFITTD +TYMFKYD+VHG WKH ++K KD KTLL GEKPVTVFG+RNP EIPWAE GAEYVV+STGVFT               V+ISAPSKDAPMF  GVNE++Y
Sbjct:   35 DPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.269e-38
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFITT+ +TYMFKYD+VHG WKH ++K KD KTLLFGEKPVTVFGVRNP EIPW E GA+YVV+STGVFT               V+ISAPSKDAPMF VGVNE++Y
Sbjct:   35 DPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.494e-38
Identity = 74/109 (67.89%), Postives = 82/109 (75.23%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFI+TD ++YMFKYDSVHG WKHHE+  KD KTLLFGEK V VFG RNP EIPW E GAEYVV+STGVFT               V+ISAPSKDAPMF VGVNE++YK
Sbjct:   38 DPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYK 146          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.240e-37
Identity = 76/110 (69.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFITTD +TYMFKYDSVHG WK+ EL  KD  TLLFG+KPVTVF  RNP EIPWA TGA+ +V+STGVFT               VIISAPSKDAPMF VGVNENEYKP
Sbjct:   36 DPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKP 145          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.240e-37
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFITTD +TYMFKYD+VHG WKH ++  KD KTLLFG+KPVTVFG+RNP EIPW E GAEYVV+STGVFT               V+ISAPSKDAPMF VGVNE++Y
Sbjct:   35 DPFITTDYMTYMFKYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
The following BLAST results are available for this feature:
BLAST of EY665621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
G3PC_CRAPL1.121e-3870.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU1.913e-3870.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE4.262e-3868.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE4.262e-3868.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ5.566e-3868.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI5.566e-3868.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU7.269e-3868.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY9.494e-3867.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA1.240e-3769.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE1.240e-3767.59Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665621 ID=EY665621; Name=EY665621; organism=Citrus sinensis; type=EST; length=378bp
TGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGATCCCTT
TATCACAACCGACTTATTGACATACATGTTTAAGTACGACAGTGTTCACG
GTCTATGGAAGCACCATGAATTGAAGGCTAAGGACTATAAGACCCTTCTC
TTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCATAGGAGAT
CCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGATTCCACTGGAGTCT
TTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAAAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGGTGTCGGTGT
CAATGAAAACGAGTACAAACCATAGCTC
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