EY665621

Overview
NameEY665621
Unique NameEY665621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 1
Query:   61 DLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFGVGVNENEYKP 372
            D LTY+FK+DS HG +        D+  L+ G++ +     RN   +PW + G + V++ TG+FT               V+ISAP K D P F +GVN   + P
Sbjct:   38 DALTYLFKFDSTHGRFPEDVRCEADH--LIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKGDIPTFVMGVNHKTFNP 140          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   55 TTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGV-GVNENEYK 369
            T D + Y FKYDS+HG ++   +   D   ++ G++ +T    R+P +I WA+TG EY+ +STGVF                VI SAP+KD  +  V GVN  +YK
Sbjct:   84 TPDYMAYQFKYDSIHGRYQGDVVVDGD-DLVIDGQRVITT-RARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYK 187          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   70 TYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFGVGVNENEY 366
            +++ KYDS+ G +K  ++K  D +T+    K + V   R+P ++PWAE G + V++ TGVF                VII+AP+K  D P + VGVNE +Y
Sbjct:   96 SHLLKYDSMLGTFKA-DVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDY 195          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.893e-11
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   70 TYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFGVGVNENEY 366
            +++ KYDS+ G +K  E+K  D +T+    K + V   R+P ++PWAE G + V++ TGVF                VII+AP+K  D P + +GVNE +Y
Sbjct:  123 SHLLKYDSMLGTFKA-EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMGVNEQDY 222          
The following BLAST results are available for this feature:
BLAST of EY665621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
G3P_CHLPN3.400e-1134.29Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PA_GUITH4.441e-1137.74Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PB_TOBAC5.800e-1136.63Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH9.893e-1136.63Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665621 ID=EY665621; Name=EY665621; organism=Citrus sinensis; type=EST; length=378bp
TGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGATCCCTT
TATCACAACCGACTTATTGACATACATGTTTAAGTACGACAGTGTTCACG
GTCTATGGAAGCACCATGAATTGAAGGCTAAGGACTATAAGACCCTTCTC
TTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCATAGGAGAT
CCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGATTCCACTGGAGTCT
TTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAAAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGGTGTCGGTGT
CAATGAAAACGAGTACAAACCATAGCTC
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