EY665621

Overview
NameEY665621
Unique NameEY665621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.182e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  D + YMFKYD+VHG +K   ++ KD K ++ G   +TVF  +NP +I W   GA+Y+V+STGVFT               V+ISAPS DAPMF VGVN ++Y
Sbjct:   34 DPFIALDYMVYMFKYDTVHGRYKG-TVEVKDGKLVVDGHA-ITVFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPSADAPMFVVGVNLDKY 139          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG + H  +KA++ K ++ G  P+T+F  R+P +I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   35 DPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 53/108 (49.07%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG + +  +KA++ K ++ G KP+T+F  R+P  I W E GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   33 DPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG + H  +KA++ K ++ G  P+T+F  R+P +I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   35 DPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKY 140          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMFKYDS HG++K  E+K +D   ++ G+K +TVF    P  IPW++ GAEY+V+STGVFT               V+ISAPS DAPMF  GVN  +Y
Sbjct:   31 DPFIALEYMVYMFKYDSTHGVFKG-EVKMEDGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPSADAPMFVCGVNLEKY 136          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFI  D   YMFKYDS HG +K  E+ A     ++ G K + VF  R+P  IPW ++G +YV++STGVFT               VII+APS DAPMF VGVNE++Y P
Sbjct:   34 DPFIAPDYAAYMFKYDSTHGRYKG-EVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTP 141          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.074e-21
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFI  D + YM KYDS HG +   ++  KD K  + G   +TVF  R+P EIPWA   A+Y+V++TGVFT               V+ISAPSKDAPMF  GVNE +Y P
Sbjct:   35 DPFIDLDYMAYMLKYDSTHGRYAG-DVSIKDGKLQVDGNS-ITVFAHRDPAEIPWATAAADYIVEATGVFTLKDKAAAHFKGGAKKVVISAPSKDAPMFVCGVNEAKYTP 142          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.799e-20
Identity = 53/109 (48.62%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFI  D + YMFKYDS HG +K   +KA++ K L+  ++ +TVF  R+P  I W + GA YVV+STGVFT               V+ISAPS DAPMF VGVN  +Y+
Sbjct:   33 DPFIDLDYMVYMFKYDSTHGRFKG-TVKAENGK-LIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASLHLKGGAKRVVISAPSADAPMFVVGVNHEKYE 139          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.799e-20
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG + +  +KA++ K ++ G KP+T+F  R+P  I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   33 DPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMFKYDS HG + H  +KA++ K ++ G+  +T+F  R+P  I W + GAEYVV+STGVFT               V+ISAPS DAPMF +GVN  +Y
Sbjct:   33 DPFIDLNYMVYMFKYDSTHGRF-HGTVKAENGKLVINGQA-ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVISAPSADAPMFVMGVNHEKY 138          
The following BLAST results are available for this feature:
BLAST of EY665621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
G3P_SCHCO6.182e-2148.15Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PONAB8.074e-2148.15Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_MOUSE8.074e-2149.07Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_HUMAN8.074e-2148.15Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_HOMAM8.074e-2148.15Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_CANAL8.074e-2148.18Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PC_CHOCR8.074e-2148.18Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_XENLA1.799e-2048.62Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_RAT1.799e-2048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_TRISI2.349e-2047.22Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665621 ID=EY665621; Name=EY665621; organism=Citrus sinensis; type=EST; length=378bp
TGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGATCCCTT
TATCACAACCGACTTATTGACATACATGTTTAAGTACGACAGTGTTCACG
GTCTATGGAAGCACCATGAATTGAAGGCTAAGGACTATAAGACCCTTCTC
TTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCATAGGAGAT
CCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGATTCCACTGGAGTCT
TTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAAAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGGTGTCGGTGT
CAATGAAAACGAGTACAAACCATAGCTC
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