EY665621

Overview
NameEY665621
Unique NameEY665621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG +K   +KA++ K ++ G K +T+F  R+P  I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN+++Y
Sbjct:   33 DPFIDLNYMVYMFQYDSTHGKFKG-TVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNQDKY 138          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMFKYDS HG +K   +KA++ K ++ G   +T+F  R+P +I W + GAEYVV+STGVFT               VIISAPS+DAPMF +GVN  +Y
Sbjct:   63 DPFIDLNYMVYMFKYDSTHGKFKG-TVKAENGKLVINGHA-ITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSRDAPMFVMGVNHEKY 168          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  +   YMFKYDS H  +K  E+ A   K  + G K +TVF  R+P  IPW + G +YV++STGVFT               V+I+APSKDAPMF VGVNE +Y
Sbjct:   34 DPFIAPEYAAYMFKYDSTHKAYKG-EVSASGNKINIDG-KEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSKDAPMFVVGVNEEKY 139          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20
Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMFKYDS HG +K   +KA++ K ++ G   +T+F  R+P  I WA+ GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   33 DPFIDLNYMVYMFKYDSTHGHFKG-TVKAENGKLVINGHA-ITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI    + YMF+YDS HG + H  +KA++ K ++ G K +T+F  R+P  I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   22 DPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKY 127          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI    + YMF+YDS HG + H  +KA++ K ++ G K +T+F  R+P  I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN  +Y
Sbjct:   33 DPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  + + YMF+YDS HG +K   +KA++ K ++ G K +T+F  R+P  I W + GAEYVV+STGVFT               VIISAPS DAPMF +GVN ++Y
Sbjct:   23 DPFIDLNYMVYMFQYDSTHGKFKG-TVKAENGKLVING-KAITIFQERDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHDKY 128          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI    + YMFKYDSVHG +K   ++ KD K ++ G  P+TVF  R+P  I W   GA+YVV+S+GVFT               VIISAPS DAPMF VGVN + Y
Sbjct:   13 DPFIDLQYMVYMFKYDSVHGRFKG-TVEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAY 118          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKP---VTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEY 366
            DPFI  D + YMFKYDS HG +K H + A+  K ++   K    + V   ++P EIPW   GAEYVV+STGVFT               VIISAPS DAPMF +GVN ++Y
Sbjct:   35 DPFINIDYMVYMFKYDSTHGRFKGH-VSAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVESTGVFTHTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNDKY 144          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFI    + YMFKYDS HG +K  E+  +D K L+  +  ++VF    P EIPW + GA+YVV+STGVF                V++SAPS DAPMF +GVNE+++ P
Sbjct:   34 DPFIDLQYMVYMFKYDSTHGRYKG-EVSMEDGK-LIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKFDP 141          
The following BLAST results are available for this feature:
BLAST of EY665621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
G3P_CRIGR2.349e-2048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P1_JACOR2.349e-2048.15Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P_PICPA3.068e-2048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CHICK3.068e-2049.07Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_SHEEP4.007e-2048.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_RABIT4.007e-2048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_MESAU4.007e-2048.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_LACDT4.007e-2050.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ONCVO5.234e-2047.75Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_ONCMY5.234e-2045.45Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665621 ID=EY665621; Name=EY665621; organism=Citrus sinensis; type=EST; length=378bp
TGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGATCCCTT
TATCACAACCGACTTATTGACATACATGTTTAAGTACGACAGTGTTCACG
GTCTATGGAAGCACCATGAATTGAAGGCTAAGGACTATAAGACCCTTCTC
TTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCATAGGAGAT
CCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGATTCCACTGGAGTCT
TTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAAAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGGTGTCGGTGT
CAATGAAAACGAGTACAAACCATAGCTC
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