EY665614

Overview
NameEY665614
Unique NameEY665614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.010e-19
Identity = 48/134 (35.82%), Postives = 68/134 (50.75%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA     + ++  G V    +       G D  YPGGA
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA 165          

HSP 2 Score: 33.113 bits (74), Expect = 7.010e-19
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  166 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 201          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.096e-19
Identity = 54/154 (35.06%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  229 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDPI+P
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPIYP 180          

HSP 2 Score: 32.3426 bits (72), Expect = 9.096e-19
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  184 FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 219          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.106e-19
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+     SW+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P
Sbjct:   45 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPIYP 170          

HSP 2 Score: 30.8018 bits (68), Expect = 9.106e-19
Identity = 17/37 (45.95%), Postives = 20/37 (54.05%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPL      PE   EL+ KEIKNG++  F   G  V
Sbjct:  174 FDPLALAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 209          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.180e-18
Identity = 56/157 (35.67%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  226 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI+P
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPIYP 203          

HSP 2 Score: 31.9574 bits (71), Expect = 1.180e-18
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++  F   G  V
Sbjct:  207 FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFV 242          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.181e-18
Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 1
Query:  265 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGGA
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGFVEGYRVGGGPLGEGLDPIYPGGA 193          

HSP 2 Score: 31.9574 bits (71), Expect = 1.181e-18
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++  F   G  V
Sbjct:  194 FDPLGLAD-DPDAFAELKVKEIKNGRLAMFSMFGFFV 229          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.181e-18
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+L+K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGGA
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGFVEGYRVGGGPLGEGLDKIYPGGA 193          

HSP 2 Score: 33.113 bits (74), Expect = 1.181e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  194 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 229          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-18
Identity = 49/139 (35.25%), Postives = 67/139 (48.20%), Query Frame = 1
Query:  265 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAE------GRRWADIIKPG 606
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE      G  + D + PG
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPG 203          

HSP 2 Score: 35.4242 bits (80), Expect = 1.534e-18
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLVSTH 802
            FDPLG  ++ PE+G  L+ KEIKNG++  F   G  +  +
Sbjct:  206 FDPLGL-AKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAY 244          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.536e-18
Identity = 46/127 (36.22%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAG--GPLGEVTDPLYP 192          

HSP 2 Score: 33.113 bits (74), Expect = 1.536e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 231          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.536e-18
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A   +P     DP++P
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--EPLGEVVDPLYP 191          

HSP 2 Score: 33.4982 bits (75), Expect = 1.536e-18
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  195 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 230          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.998e-18
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  220 TAGT-RSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            TAG  ++V  S+    P+R  +   F G +P  +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   38 TAGKPKTVQSSSPWYGPDRVKYLGPFSGESP-SYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG--GPLGEVVDPLYP 192          

HSP 2 Score: 33.113 bits (74), Expect = 1.998e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 231          
The following BLAST results are available for this feature:
BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB25_SOLLC7.010e-1935.82Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_CUCSA9.096e-1935.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SOYBN9.106e-1938.28Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2A_PINSY1.180e-1835.67Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_GOSHI1.181e-1835.81Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC1.181e-1835.82Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_ARATH1.534e-1835.25Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB27_TOBAC1.536e-1836.22Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_NICPL1.536e-1835.43Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2A_SPIOL1.998e-1834.81Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT
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