EY665614 | Citrus Genome Database

Overview


Name	EY665614
Unique Name	EY665614
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	802

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.598e-18
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1

Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++ V+++ +G  EG R A    P     DP++P
Sbjct:   65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDPLYP 190

HSP 2 Score: 33.113 bits (74), Expect = 2.598e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  194 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 229

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.598e-18
Identity = 46/127 (36.22%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG--GPLGEVVDPLYP 190

HSP 2 Score: 33.4982 bits (75), Expect = 2.598e-18
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  194 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 229

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.599e-18
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1

Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++ V+++ +G  EG R A    P     DP++P
Sbjct:   61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGEVVDPLYP 186

HSP 2 Score: 33.113 bits (74), Expect = 2.599e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  190 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 225

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.378e-18
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYP 190

HSP 2 Score: 33.4982 bits (75), Expect = 3.378e-18
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  194 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 229

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.378e-18
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 192

HSP 2 Score: 33.4982 bits (75), Expect = 3.378e-18
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 231

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.378e-18
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 191

HSP 2 Score: 33.4982 bits (75), Expect = 3.378e-18
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  195 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 230

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.392e-18
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYP 192

HSP 2 Score: 33.113 bits (74), Expect = 4.392e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 231

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.709e-18
Identity = 50/133 (37.59%), Postives = 69/133 (51.88%), Query Frame = 1

Query:  283 FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            F G TP  +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDPI+P
Sbjct:   64 FSGETP-SYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVTDPIYP 193

HSP 2 Score: 31.9574 bits (71), Expect = 5.709e-18
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++  F   G  V
Sbjct:  197 FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSMFGFFV 232

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.428e-18
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 1

Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R         V   P+       G D  YPGGA
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG-----EGLDKVYPGGA 191

HSP 2 Score: 31.187 bits (69), Expect = 7.428e-18
Identity = 16/37 (43.24%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KE+KNG++  F   G  V
Sbjct:  192 FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFV 227

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.428e-18
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 1

Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PE+L+K G+      W+ AG                L +      ++ V+++ +G+ EG R         V   P+       G D  YPGGA
Sbjct:   50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLG-----EGLDKVYPGGA 191

HSP 2 Score: 31.187 bits (69), Expect = 7.428e-18
Identity = 16/37 (43.24%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KE+KNG++  F   G  V
Sbjct:  192 FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFV 227

The following BLAST results are available for this feature:

BLAST of EY665614 vs. ExPASy Swiss-Prot

BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB21_ORYSJ	2.598e-18	35.94	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB22_TOBAC	2.598e-18	36.22	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB22_ORYSJ	2.599e-18	35.94	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2B_SOLLC	3.378e-18	35.43	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB24_TOBAC	3.378e-18	35.43	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB21_TOBAC	3.378e-18	35.43	Chlorophyll a-b binding protein 16, chloroplastic ...	[more]
CB2G_SOLLC	4.392e-18	35.43	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB2_PHYPA	5.709e-18	37.59	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSJ	7.428e-18	32.69	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	7.428e-18	32.69	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT