EY665614 | Citrus Genome Database

Overview


Name	EY665614
Unique Name	EY665614
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	802

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.428e-18
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A    P     DP++P
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG--GPLGEIVDPLYP 189

HSP 2 Score: 35.039 bits (79), Expect = 7.428e-18
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE+  EL+ KE+KNG++  F   G  V
Sbjct:  193 FDPLGL-AEDPERSAELKVKELKNGRLAMFSMFGFFV 228

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.642e-18
Identity = 55/157 (35.03%), Postives = 79/157 (50.32%), Query Frame = 1

Query:  226 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG               +L +      ++  ++I +G  EG R A    P    TDPI+P
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG--GPLGEVTDPIYP 203

HSP 2 Score: 29.6462 bits (65), Expect = 9.642e-18
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   +++ KEIKNG++  F   G  V
Sbjct:  207 FDPLGLAD-DPDAFADVKVKEIKNGRLAMFSMFGFFV 242

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.655e-18
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGA 678
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +  N  L    D+ YPGG+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS 195

HSP 2 Score: 32.7278 bits (73), Expect = 9.655e-18
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KE+KNG++  F   G  V
Sbjct:  196 FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFV 231

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.655e-18
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGA 678
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG  + F+D         +L   + I   WA       +I  G V    +  N  L    D+ YPGG+
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSDGGLDYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS 195

HSP 2 Score: 32.7278 bits (73), Expect = 9.655e-18
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KE+KNG++  F   G  V
Sbjct:  196 FDPLGLAT-DPEAFAELKVKELKNGRLAMFSMFGFFV 231

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.658e-18
Identity = 47/134 (35.07%), Postives = 66/134 (49.25%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL+K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G +    +       G D  YPGGA
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAI-WA-----TQVVLMGLIEGYRVGGGPLGEGLDPLYPGGA 192

HSP 2 Score: 33.113 bits (74), Expect = 9.658e-18
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  193 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 228

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.737e-18
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1

Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PP +L G  PGD+G+D  GL +DPET   N + E++H  WAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P    TDPI+P
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPIYP 131

HSP 2 Score: 32.3426 bits (72), Expect = 9.737e-18
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  135 FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 170

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.255e-17
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 192

HSP 2 Score: 31.5722 bits (70), Expect = 1.255e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ K IKNG++  F   G  V
Sbjct:  196 FDPLGL-AEDPEAFAELKVKHIKNGRLAMFSMFGFFV 231

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.256e-17
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1

Query:  298 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   62 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYP 187

HSP 2 Score: 32.3426 bits (72), Expect = 1.256e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  191 FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 226

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.632e-17
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1

Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYP 191

HSP 2 Score: 33.113 bits (74), Expect = 1.632e-17
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  195 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 230

[Close]

BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.124e-17
Identity = 55/162 (33.95%), Postives = 78/162 (48.15%), Query Frame = 1

Query:  223 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL-TKLGI-LNTPSWYTAGE-------LEYF--------TDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PELL T  G+    P W+ AG        L+Y          +      V+++ +G  EG R      P     DP++P
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPLYP 181

HSP 2 Score: 31.5722 bits (70), Expect = 2.124e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2

Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++  F   G  V
Sbjct:  185 FDPLGLAD-DPDTFAELKVKEIKNGRLAMFSCFGFFV 220

The following BLAST results are available for this feature:

BLAST of EY665614 vs. ExPASy Swiss-Prot

BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB23_APIGR	7.428e-18	35.43	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB2A_PYRPY	9.642e-18	35.03	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB22_ARATH	9.655e-18	36.30	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ARATH	9.655e-18	36.30	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB21_LEMGI	9.658e-18	35.07	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_CUCSA	9.737e-18	35.94	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB25_TOBAC	1.255e-17	35.43	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB21_MAIZE	1.256e-17	35.16	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB24_PETSP	1.632e-17	34.65	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB2_CHLMO	2.124e-17	33.95	Chlorophyll a-b binding protein of LHCII type I, c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT