EY665614

Overview
NameEY665614
Unique NameEY665614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.125e-17
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  265 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R      P     DP++P
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNG--GPAGEGLDPLYP 178          

HSP 2 Score: 33.113 bits (74), Expect = 2.125e-17
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++ +F   G  V
Sbjct:  182 FDPLGLAD-DPDTFAELKVKEIKNGRLASFSMFGFFV 217          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.759e-17
Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVVDPLYP 190          

HSP 2 Score: 27.335 bits (59), Expect = 2.759e-17
Identity = 15/37 (40.54%), Postives = 19/37 (51.35%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+K G++      G  V
Sbjct:  194 FDPLGLAD-DPEAFGELKVKELKKGRLAMLSMFGFFV 229          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.759e-17
Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  265 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGGA
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAI-WA-----TQVVLMGFVEGYRVGGGPLGEGLDPLYPGGA 193          

HSP 2 Score: 31.5722 bits (70), Expect = 2.759e-17
Identity = 16/37 (43.24%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KE+KNG++  F   G  V
Sbjct:  194 FDPLGLAD-DPDSFAELKVKELKNGRLAMFSMFGFFV 229          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.587e-17
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG        L+Y  + +         ++  +++ +G  EG R A    P  V  DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDPLYP 192          

HSP 2 Score: 31.187 bits (69), Expect = 3.587e-17
Identity = 16/34 (47.06%), Postives = 20/34 (58.82%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDG 784
            FDPLG  +  PE   EL+ KE KNG++  F   G
Sbjct:  196 FDPLGL-AEDPEAFAELKVKETKNGRLAMFSMFG 228          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.587e-17
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 192          

HSP 2 Score: 33.113 bits (74), Expect = 3.587e-17
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 231          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.587e-17
Identity = 47/147 (31.97%), Postives = 66/147 (44.90%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +        P +L G  PGD+G+D   + +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG   +      +     L   + I   WA       ++  G +    +       G D   PGGA
Sbjct:   53 PDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWA-----CQVVLMGLIEGYRVGGGTLGEGLDPLLPGGA 194          

HSP 2 Score: 33.113 bits (74), Expect = 3.587e-17
Identity = 18/37 (48.65%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KEIKNG++  F   G  V
Sbjct:  195 FDPLGLAD-DPEACAELKVKEIKNGRLAMFSMFGFFV 230          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.661e-17
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 193          

HSP 2 Score: 32.3426 bits (72), Expect = 4.661e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  197 FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 232          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.661e-17
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 194          

HSP 2 Score: 32.3426 bits (72), Expect = 4.661e-17
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  198 FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFV 233          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.062e-17
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYP 192          

HSP 2 Score: 33.4982 bits (75), Expect = 6.062e-17
Identity = 18/37 (48.65%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KEIKNG++  F   G  V
Sbjct:  196 FDPLGL-AEDPEAFAELKVKEIKNGRLAMFSMFGFFV 231          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.094e-17
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P     DP++P
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVVDPLYP 153          

HSP 2 Score: 31.9574 bits (71), Expect = 6.094e-17
Identity = 17/37 (45.95%), Postives = 22/37 (59.46%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG  +  PE   EL+ KE+KNG++  F   G  V
Sbjct:  157 FDPLGL-AEVPEAFAELKVKELKNGRLAMFSMFGFFV 192          
The following BLAST results are available for this feature:
BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_CHLRE2.125e-1734.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_MAIZE2.759e-1734.75Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA2.759e-1735.81Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_PETSP3.587e-1735.43Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB25_PETSP3.587e-1734.65Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PINTH3.587e-1731.97Chlorophyll a-b binding protein type I, chloroplas... [more]
CB28_PEA4.661e-1735.43Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA4.661e-1735.43Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_PETSP6.062e-1734.65Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PEA6.094e-1735.43Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT
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