EY665614

Overview
NameEY665614
Unique NameEY665614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.881e-17
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG--GPLGEVVDPLYP 190          

HSP 2 Score: 30.0314 bits (66), Expect = 7.881e-17
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   +++ KE+KNG++  F   G  V
Sbjct:  194 FDPLGLAD-DPEAFADVKVKELKNGRLAMFSMFGFFV 229          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.024e-16
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVIDPLYP 191          

HSP 2 Score: 34.6538 bits (78), Expect = 1.024e-16
Identity = 19/37 (51.35%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   ELE KEIKNG++  F   G  V
Sbjct:  195 FDPLGLAD-DPEAFAELEVKEIKNGRLAMFSMFGFFV 230          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.411e-15
Identity = 49/154 (31.82%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  220 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            TA T+ V       D  + L       P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W       ++ G L+Y  + +         ++  +++ +G  EG R A    P     DP++P
Sbjct:   38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEVVDPLYP 189          

HSP 2 Score: 30.0314 bits (66), Expect = 1.411e-15
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG    + E   EL+ KEIKNG++  F   G  V
Sbjct:  193 FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFV 228          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.431e-15
Identity = 52/148 (35.14%), Postives = 71/148 (47.97%), Query Frame = 1
Query:  265 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGA 678
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGGA
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA 192          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  220 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAG 504
            T   R  +V  AA +   P+R  +   F  +  PE+L G  PGD+G+D  GL +DP+T     + E++H RWA+LGA GI  PELL++  G+    P W+ AG
Sbjct:   18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG 120          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1
Query:  217 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELL 459
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PELL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL 433          

HSP 2 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  268 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE 507
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ 74          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 7.945e-12
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  352 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDPI+P
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG--GPLGEVTDPIYP 181          

HSP 2 Score: 31.9574 bits (71), Expect = 7.945e-12
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     PE   EL+ KE+KNG++  F   G  V
Sbjct:  185 FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFV 220          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  295 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 504
            +PP +L G  PGD+G+D  GL +DPET   N + E++HCRWA+    G   PELL + G+      W+ AG
Sbjct:   63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAG 133          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAG 504
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K +G+    P W+ AG
Sbjct:   67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.735e-11
Identity = 46/164 (28.05%), Postives = 73/164 (44.51%), Query Frame = 1
Query:  226 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP 633
            G ++VS S+++A+     + P +T         P    G  PGD+G+D  GL +DPET +   + E++H R  +LGA G+  PELL      K G  +   W+ AG                L +  +      V+++ +G  EG R      P     DP++P
Sbjct:   43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPLYP 199          

HSP 2 Score: 31.187 bits (69), Expect = 1.735e-11
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 2
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FDPLG     P+   EL+ KEIKNG++  F   G  V
Sbjct:  203 FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFV 238          
The following BLAST results are available for this feature:
BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB29_MAIZE7.881e-1734.04Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_PETSP1.024e-1633.07Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_HORVU1.411e-1531.82Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SILPR1.431e-1535.14Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNTE3.298e-1239.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
LH18_EUGGR5.625e-1241.98Light-harvesting complex I LH38 proteins (Fragment... [more]
CB22_SOYBN7.945e-1235.45Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB48_MAIZE9.596e-1243.66Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB23_HORVU1.637e-1147.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA1.735e-1128.05Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT
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