EY665614

Overview
NameEY665614
Unique NameEY665614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.254e-11
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 1 
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 639
            P +L G  PGD+G+D  GL + PET   N + E++H R AM  A G   PELL+ +G       W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDP++P +
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR--GPLGEVTDPLYPGS 196

HSP 2 Score: 26.5646 bits (57), Expect = 2.254e-11
Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = 2 
Query:  683 FDPLGWGSRSPEKGKELETKEIKNGKMGNFGWDGGLV 793
            FD LG  +   E   EL+ KE+KNG++  F   G  V
Sbjct:  197 FDSLGL-AEDTEAFAELKVKELKNGRLAMFSMFGFFV 232
[Close]
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  301 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGELEYFTD 525
            P +L+G  PGD+G+D  GL +DPE    N   E++H RWAMLGA G   PE+L K   ++   P W+ AG  + F+D
Sbjct:   64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS-QIFSD 139
The following BLAST results are available for this feature:
BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_MALDO2.254e-1132.56Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC2.792e-1144.16Chlorophyll a-b binding protein 13, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT
back to top