EL492437

Overview
NameEL492437
Unique NameEL492437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:599..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 4.095e-60
Identity = 106/139 (76.26%), Postives = 126/139 (90.65%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSA+ PLMQKLRQVLV+HAL+NG+ EK + +SIFQKI AFE+ELKT+LPKEVE AR  +E+G+  IPNRIKECRSYPLY++VRE++G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGAPLPIC
Sbjct:  582 YIDDPCSASSPLMQKLRQVLVDHALDNGDREKNSTTSIFQKIGAFEDELKTLLPKEVEIARTELESGNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGAPLPIC 720
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.348e-60
Identity = 106/139 (76.26%), Postives = 121/139 (87.05%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS+TYPLMQKLRQVLV+HA+ NGE+EK  NSSIFQKI AFE+ELK VLPKEVE+AR  VE+G+P IPNRI ECRSYPLYRLVR+E+G+  LTGEKV SPGEE DKVFTA C G+IIDP+LECL+ WNGAP+PIC
Sbjct:  583 YADDPCSSTYPLMQKLRQVLVDHAMKNGESEKNLNSSIFQKIVAFEDELKAVLPKEVESARAVVESGNPAIPNRITECRSYPLYRLVRQEVGTELLTGEKVRSPGEEIDKVFTAFCNGQIIDPLLECLKSWNGAPIPIC 721
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL3_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.348e-60
Identity = 111/139 (79.86%), Postives = 120/139 (86.33%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  D CSA YPLMQKLRQVLV+HAL NGENEK ANSSIFQKI AFE ELK VLPKEVE+AR ++ENG+P I NRIKECRSYPLYR VREELG+  LTGEKV SPGEE DKVFTAMC G+IID +LECL+EWNGAPLPIC
Sbjct:  574 YADDACSANYPLMQKLRQVLVDHALENGENEKNANSSIFQKILAFEGELKAVLPKEVESARISLENGNPAIANRIKECRSYPLYRFVREELGAELLTGEKVRSPGEECDKVFTAMCNGQIIDSLLECLKEWNGAPLPIC 712
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL3_PETCR (Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.348e-60
Identity = 106/139 (76.26%), Postives = 123/139 (88.49%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLR+ LVEHALNNG+ E+  ++SIFQKIAAFE+ELK +LPKEVE AR  +E+G+P IPNRIKECRSYPLY+ VREELG+ +LTGEKV SPGEEF+KVFTAM +G+IIDP+LECL  WNGAPLPIC
Sbjct:  580 YIDDPCSATYPLMQKLRETLVEHALNNGDKERNLSTSIFQKIAAFEDELKALLPKEVETARAALESGNPAIPNRIKECRSYPLYKFVREELGTEYLTGEKVRSPGEEFEKVFTAMSKGEIIDPLLECLESWNGAPLPIC 718
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.985e-60
Identity = 107/139 (76.98%), Postives = 123/139 (88.49%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQVLVEHAL NGENEK A++SIFQKI AFEEELK +LPKEV++AR  +++GS  +PNRI ECRSYPLY+ VREELG+ +LTGEKV SPGEE DKVFTA+C+GKIIDP+L+CL  WNGAPLPIC
Sbjct:  579 YIDDPCSATYPLMQKLRQVLVEHALTNGENEKNASTSIFQKIVAFEEELKVLLPKEVDSARAALDSGSAGVPNRITECRSYPLYKFVREELGAEYLTGEKVRSPGEECDKVFTAICEGKIIDPILDCLEGWNGAPLPIC 717
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_PETCR (Phenylalanine ammonia-lyase 2 OS=Petroselinum crispum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 9.123e-60
Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPLMQKLRQ LVEHAL NG+NE+  N+SIFQKIA FE+ELK +LPKEVE+AR  +E+G+P IPNRI+ECRSYPLY+ VR+ELG  +LTGEKVTSPGEEFDKVF AM +G+IIDP+LECL  WNGAPLPIC
Sbjct:  578 YIDDPCSATYPLMQKLRQTLVEHALKNGDNERNMNTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGIEYLTGEKVTSPGEEFDKVFIAMSKGEIIDPLLECLESWNGAPLPIC 716
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.191e-59
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y+ DPCSATYPLMQKLRQV V+HAL NGENEK  ++S+FQKI AFEEELK +LPKEVE+AR   ++G+  I N+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+PLPIC
Sbjct:  577 YVDDPCSATYPLMQKLRQVFVDHALENGENEKNFSTSVFQKIEAFEEELKALLPKEVESARAAYDSGNSAIDNKIKECRSYPLYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPIC 715
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_PHAVU (Phenylalanine ammonia-lyase class 2 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.191e-59
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCS TYPLMQKLRQVLV++AL NGENEK  N+SIFQKIA+FEEELKT+LPKEVE AR   EN    IPN+IK+CRSYPLY+ VREELG++ LTGEKV SPGEE DKVF+AMCQGKIIDP+LECL EWNGAPLPIC
Sbjct:  574 YIDDPCSGTYPLMQKLRQVLVDYALANGENEKNLNTSIFQKIASFEEELKTLLPKEVEGARLAYENDQCAIPNKIKDCRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFSAMCQGKIIDPLLECLGEWNGAPLPIC 712
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_MEDSA (Phenylalanine ammonia-lyase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.032e-59
Identity = 108/139 (77.70%), Postives = 121/139 (87.05%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DPCSATYPL QKLRQVLV+HAL NGE+EK  N+SIFQKIA FEEELKT+LPKEVE+AR   E+G+PTIPN+I  CRSYPLY+ VREELG+  LTGE V SPGEE DK+F+AMCQGKIIDP+LECL EWNGAPLPIC
Sbjct:  587 YIDDPCSATYPLSQKLRQVLVDHALVNGESEKNFNTSIFQKIATFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPIC 725
[Close]
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 2.032e-59
Identity = 108/139 (77.70%), Postives = 119/139 (85.61%), Query Frame = 2 
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            YI DP S TYPLMQKLRQVLV+HAL N ENEK  N+SIFQKIA FEEELKT+LPKEVE+ R   E+G   IPN+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGAPLPIC
Sbjct:  368 YIDDPYSGTYPLMQKLRQVLVDHALINAENEKDVNTSIFQKIATFEEELKTILPKEVESTRAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 506
The following BLAST results are available for this feature:
BLAST of EL492437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PALY_CITLI4.095e-6076.26Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL5_SOLLC5.348e-6076.26Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL3_TOBAC5.348e-6079.86Phenylalanine ammonia-lyase OS=Nicotiana tabacum P... [more]
PAL3_PETCR5.348e-6076.26Phenylalanine ammonia-lyase 3 OS=Petroselinum cris... [more]
PAL1_PRUAV6.985e-6076.98Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL2_PETCR9.123e-6076.26Phenylalanine ammonia-lyase 2 OS=Petroselinum cris... [more]
PALY_POPTR1.191e-5976.98Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL2_PHAVU1.191e-5978.42Phenylalanine ammonia-lyase class 2 OS=Phaseolus v... [more]
PALY_MEDSA2.032e-5977.70Phenylalanine ammonia-lyase OS=Medicago sativa PE=... [more]
PAL1_PHAVU2.032e-5977.70Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionC0350 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0350, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492437 ID=EL492437; Name=EL492437; organism=Citrus sinensis; type=EST; length=428bp
ACGTCTTTGCTACATTGTTGACCCCTGCAGTGCTACCTATCCATTGATGC
AAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAAC
GAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGA
GGAATTGAAAACCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTG
TTGAGAATGGAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCT
TACCCTTTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAAC
AGGGGAAAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAG
CAATGTGCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAA
TGGAATGGCGCCCCTCTTCCAATTTGTT
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