EL492437

Overview
NameEL492437
Unique NameEL492437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:599..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.696e-48
Identity = 89/138 (64.49%), Postives = 107/138 (77.54%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 424
            YI DP +  YPLM KL+QVL E A  +  N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+P  PNRIKECRSYPLY+ VREELG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG P+PI
Sbjct:  573 YIDDPLNVRYPLMPKLKQVLYEQAHTSVINDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNGVPIPI 710          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.010e-48
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG PLPIC
Sbjct:  575 YADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC 713          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.010e-48
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y  DPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYR VREELG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG PLPIC
Sbjct:  575 YADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNGEPLPIC 713          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 5.741e-46
Identity = 90/138 (65.22%), Postives = 106/138 (76.81%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPI 424
            Y  DPCSA YPLMQKLR VLVEHAL +G+ E  A  S+F KI  FEEEL++ LP+E+E AR  V NG+  + NRI E RS+PLYR VREELG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG PLPI
Sbjct:  565 YADDPCSANYPLMQKLRAVLVEHALTSGDAEPEA--SVFSKITKFEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNGEPLPI 700          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.759e-43
Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 427
            Y+ DP S T PLMQKLR VL + AL   E E     ++F+KI AFE ELK +LPKEVE  R   ENG+  + NRIK+CRSYPLYR VR EL +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGAP+ IC
Sbjct:  559 YVDDPSSLTNPLMQKLRHVLFDKALAEPEGE---TDTVFRKIGAFEAELKFLLPKEVERVRTEYENGTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGAPISIC 694          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 409
            YI DPC+A+YPL QKLR +LVEHA  N E EK  N+SIF KI  FE ELK  L  +V  AR++ + G+  +P+RI+ECRSYPLY  VR +LG+  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  581 YIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLARESYDKGTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
BLAST of EL492437 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.559e-35
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 2
Query:   11 YIVDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELG 286
            Y  DPC  TYPLMQKLRQVLV+HALNNGE EK AN+SIFQKIA FE+ELK +LPKEVE+ R   ENG+ +IPNRIK CRSYPLYR VREELG
Sbjct:  573 YADDPCLTTYPLMQKLRQVLVDHALNNGETEKNANTSIFQKIATFEDELKAILPKEVESVRVAFENGTMSIPNRIKACRSYPLYRFVREELG 664          
The following BLAST results are available for this feature:
BLAST of EL492437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL3_PHAVU4.696e-4864.49Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL2_ORYSJ8.010e-4864.75Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI8.010e-4864.75Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_ORYSJ5.741e-4665.22Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_ARATH7.759e-4361.15Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PALY_PINTA2.673e-3551.13Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_HELAN4.559e-3576.09Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]

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Properties
Property NameValue
Genbank descriptionC0350 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0350, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492437 ID=EL492437; Name=EL492437; organism=Citrus sinensis; type=EST; length=428bp
ACGTCTTTGCTACATTGTTGACCCCTGCAGTGCTACCTATCCATTGATGC
AAAAGCTAAGGCAAGTACTTGTTGAGCACGCACTGAACAATGGAGAGAAC
GAGAAGACTGCCAACTCTTCAATCTTCCAGAAGATTGCAGCCTTTGAGGA
GGAATTGAAAACCGTTTTGCCCAAAGAAGTTGAGAACGCCAGGCAGACTG
TTGAGAATGGAAGTCCAACAATTCCCAACAGGATCAAAGAATGCAGGTCT
TACCCTTTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAAC
AGGGGAAAAAGTTACATCGCCCGGCGAGGAATTTGACAAAGTGTTTACAG
CAATGTGCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAA
TGGAATGGCGCCCCTCTTCCAATTTGTT
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