EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.332e-23
Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            SVAGPHPYPMMVRDFH VIG+ETR+QAL+KWGG PD+L+ACVGGGSNAMGLF++F+ +
Sbjct:  208 SVAGPHPYPMMVRDFHRVIGQETRQQALKKWGGLPDILLACVGGGSNAMGLFYDFIDE 265          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.188e-21
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG+E ++Q LE +G  PDVL+ACVGGGSNAMGLFH F+   S
Sbjct:  212 SVAGPHPYPMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.082e-21
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+PM+VRDFHAVIG+E ++Q LE +G  PD+L+ACVGGGSNAMGLFH FV + S
Sbjct:  211 SVAGPHPFPMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKS 270          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPM+VRDFHAVIG+ETR+Q  E +G  PDVL+ACVGGGSNAMGLFH FV
Sbjct:  212 SVAGPHPYPMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFV 267          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV   S
Sbjct:  213 SVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKS 272          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+P +VRDFHAVIG+ET++Q LE +G  PD+L+ACVGGGSNAMGLFH FV + S
Sbjct:  212 SVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM2 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9215) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+P +VRDFHAVIG+ET++Q LE +G  PD+L+ACVGGGSNAMGLFH FV + S
Sbjct:  212 SVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV   S
Sbjct:  213 SVAGPHPYPMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKS 272          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM0 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9301) GN=trpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.379e-20
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+P +VRDFHAVIG+ET++Q LE +G  PD+L+ACVGGGSNAMGLFH FV + S
Sbjct:  212 SVAGPHPFPKIVRDFHAVIGEETKKQCLESFGSFPDILLACVGGGSNAMGLFHPFVKETS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.801e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP +VR FH VIG+ETR+Q  EKWGG PDVL+ACVGGGSNA+GLF+EFV
Sbjct:  210 TVAGPHPYPKLVRAFHDVIGQETRQQCQEKWGGLPDVLLACVGGGSNALGLFNEFV 265          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_SYNY31.332e-2379.31Tryptophan synthase beta chain OS=Synechocystis sp... [more]
TRPB_PROMA6.188e-2173.33Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMP8.082e-2171.67Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPW1.056e-2080.36Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMT1.056e-2073.33Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMS1.056e-2071.67Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM21.056e-2071.67Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM11.056e-2073.33Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM01.379e-2071.67Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNJB1.801e-2076.79Tryptophan synthase beta chain OS=Synechococcus sp... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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