EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.801e-20
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG+E R+Q  E +G  PDVL+ACVGGGSNAMGLFH FV   S
Sbjct:  232 SVAGPHPYPMLVRDFHAVIGQEARQQCAEAFGRLPDVLLACVGGGSNAMGLFHPFVQDRS 291          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.801e-20
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+PM+VRDFHAVIG+E ++Q +E +G  PD+L+ACVGGGSNAMGLFH FV + S
Sbjct:  212 SVAGPHPFPMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 45/60 (75.00%), Postives = 48/60 (80.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG E R Q  E +G  PDVL+ACVGGGSNAMGLFH FV   S
Sbjct:  214 SVAGPHPYPMLVRDFHAVIGNEAREQCKESFGRLPDVLLACVGGGSNAMGLFHPFVQDTS 273          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM4 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9211) GN=trpB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.352e-20
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPM+VRDFH+VIG+ET++Q  E +G  PDVL+ACVGGGSNAMGLFH F+
Sbjct:  212 SVAGPHPYPMLVRDFHSVIGEETKQQCKEAFGRSPDVLLACVGGGSNAMGLFHSFI 267          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.011e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPM+VRDFHAVIG+E R+Q  E +G  PDVL+ACVGGGSNAMGLFH FV
Sbjct:  214 SVAGPHPYPMLVRDFHAVIGQEARQQCREAFGRLPDVLMACVGGGSNAMGLFHPFV 269          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.842e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPM+VRDFHAVIG+E+++Q  E +G  PDVL+ACVGGGSNAMGLFH FV
Sbjct:  214 SVAGPHPYPMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFV 269          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.842e-20
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHAVIG+E ++Q  E +G  PDVL+ACVGGGSNAMGLFH FV   S
Sbjct:  214 SVAGPHPYPMLVRDFHAVIGQEAKQQCEEAFGRLPDVLMACVGGGSNAMGLFHPFVQDTS 273          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PROM9 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9312) GN=trpB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.842e-20
Identity = 41/60 (68.33%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHP+P +VRDFHAVIG+ET++Q  E +G  PD+L+ACVGGGSNAMGLFH F+ + S
Sbjct:  212 SVAGPHPFPKIVRDFHAVIGEETKKQCQESFGSLPDILLACVGGGSNAMGLFHPFIKETS 271          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPW (Tryptophan synthase beta chain OS=Pseudomonas putida (strain W619) GN=trpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.524e-19
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD LIACVGGGSNAMGLFHEF+  +S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHEFLEDES 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.600e-19
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ + S
Sbjct:  198 TVAGPHPYPAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPS 257          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_PROMM1.801e-2075.00Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM51.801e-2070.00Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNS32.352e-2075.00Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM42.352e-2075.00Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPX4.011e-2078.57Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNSC6.842e-2076.79Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNS96.842e-2073.33Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROM96.842e-2068.33Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PSEPW1.524e-1973.33Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEPU2.600e-1971.67Tryptophan synthase beta chain OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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