EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSESH (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola GN=trpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDAS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSE14 (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.685e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDAS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP2 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain HaA2) GN=trpB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.201e-18
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYPMMVRDF AVIG+E R Q +E  G  PD LIAC+GGGSNAMGLFH F+   S
Sbjct:  201 TVAGPHPYPMMVRDFQAVIGQEVRAQIMEAEGRLPDSLIACIGGGSNAMGLFHPFLDDSS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSESM (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. tomato GN=trpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF +VIGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQSVIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDAS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PARL1 (Tryptophan synthase beta chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF +VIG+ET++Q LE+ G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  201 TVAGPHPYPAMVRDFQSVIGEETKKQMLEREGRLPDSLVACIGGGSNAMGLFHPFLDDPS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYPMMVRDF A+IG E R+Q  E++G +PD LIACVGGGSNA+GLF+ ++ +++
Sbjct:  193 TVAGPHPYPMMVRDFQAIIGNEARQQMREEYGRQPDALIACVGGGSNAIGLFYPYIDEEN 252          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_NITEC (Tryptophan synthase beta chain OS=Nitrosomonas eutropha (strain C91) GN=trpB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYPMMVRDF AVIG E R+Q  E++G +PD LIACVGGGSNA+GLF+ ++ +++
Sbjct:  195 TVAGPHPYPMMVRDFQAVIGNEARQQMQEEYGRQPDALIACVGGGSNAIGLFYPYIGEEN 254          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RUTMC (Tryptophan synthase beta chain OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.754e-18
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +V GPHPYPMMVRDF ++IGKET+ Q   + GG PDVL+ACVGGGSNA+GLFH F+   S
Sbjct:  195 TVVGPHPYPMMVRDFQSIIGKETKVQFAAQVGGLPDVLVACVGGGSNAIGLFHAFIDDAS 254          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PHEZH (Tryptophan synthase beta chain OS=Phenylobacterium zucineum (strain HLK1) GN=trpB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.903e-18
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S AG HPYPMMVRDF AVIG+ETR Q LE  G  PD L+ACVGGGSNA+GLFH F+   S
Sbjct:  202 SAAGMHPYPMMVRDFQAVIGRETREQILELEGRLPDALVACVGGGSNAIGLFHPFLNDSS 261          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_BRASO (Tryptophan synthase beta chain OS=Bradyrhizobium sp. (strain ORS278) GN=trpB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.404e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYPMMVRDF +VIG+ETR Q  E  G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  201 TVAGPHPYPMMVRDFQSVIGQETRTQMQEAEGRLPDSLVACIGGGSNAMGLFHPFLDDPS 260          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_PSESH1.685e-1871.67Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSE141.685e-1871.67Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_RHOP22.201e-1870.00Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_PSESM2.875e-1871.67Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PARL12.875e-1866.67Tryptophan synthase beta chain OS=Parvibaculum lav... [more]
TRPB_NITEU2.875e-1863.33Tryptophan synthase beta chain OS=Nitrosomonas eur... [more]
TRPB_NITEC2.875e-1865.00Tryptophan synthase beta chain OS=Nitrosomonas eut... [more]
TRPB_RUTMC3.754e-1866.67Tryptophan synthase beta chain OS=Ruthia magnifica... [more]
TRPB_PHEZH4.903e-1870.00Tryptophan synthase beta chain OS=Phenylobacterium... [more]
TRPB_BRASO6.404e-1868.33Tryptophan synthase beta chain OS=Bradyrhizobium s... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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