EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LEPIC (Tryptophan synthase beta chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=trpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            S  GPHP+P +VRDF +VIG E+R+Q  +     P+ +IACVGGGSNA+G+F+ F+
Sbjct:  192 SSIGPHPFPTIVRDFQSVIGIESRKQFKKVNDKLPNAVIACVGGGSNAIGMFYGFI 247          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PARD8 (Tryptophan synthase beta chain OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=trpB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.806e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-GKPDVLIACVGGGSNAMGLFHEFVTQD 190
            S  GPHPYP MV    +VI +E ++Q LEK G   PD LIACVGGGSNA G  + FV  +
Sbjct:  193 STVGPHPYPDMVARLQSVISEEIKKQLLEKEGRDHPDYLIACVGGGSNAAGTIYHFVDDE 252          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CHLTR (Tryptophan synthase beta chain OS=Chlamydia trachomatis GN=trpB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.582e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            S  GP PYP +VR F +VI  E + Q     G  PD+LIAC+GGGSNA+G FH F+
Sbjct:  187 SALGPLPYPDIVRFFQSVISAEVKEQIHAVAGRDPDILIACIGGGSNAIGFFHHFI 242          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_BLOFL (Tryptophan synthase beta chain OS=Blochmannia floridanus GN=trpB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.582e-11
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHP+P +V++F  +IG ET  Q        PD +IAC+GGGSNA+G+F  F+
Sbjct:  190 TVAGPHPFPTIVKEFQRIIGSETYNQIQTHEKKLPDAVIACIGGGSNAIGIFSGFI 245          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJR (Tryptophan synthase beta chain OS=Campylobacter jejuni (strain RM1221) GN=trpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.903e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S  GP+PYP MV  F ++IGKE + Q L+K   K D +IA VGGGSNA G+F++F+  ++
Sbjct:  187 SAVGPYPYPKMVMHFQSIIGKECKMQ-LQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDEN 245          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJJ (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=trpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.903e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S  GP+PYP MV  F ++IGKE + Q L+K   K D +IA VGGGSNA G+F++F+  ++
Sbjct:  187 SAVGPYPYPKMVMHFQSIIGKECKMQ-LQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDEN 245          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJE (Tryptophan synthase beta chain OS=Campylobacter jejuni GN=trpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.903e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S  GP+PYP MV  F ++IGKE + Q L+K   K D +IA VGGGSNA G+F++F+  ++
Sbjct:  187 SAVGPYPYPKMVMHFQSIIGKECKMQ-LQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDEN 245          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJD (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=trpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.903e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S  GP+PYP MV  F ++IGKE + Q L+K   K D +IA VGGGSNA G+F++F+  ++
Sbjct:  187 SAVGPYPYPKMVTHFQSIIGKECKMQ-LQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDEN 245          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMJ8 (Tryptophan synthase beta chain OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=trpB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.903e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            S  GP+PYP MV  F ++IGKE + Q L+K   K D +IA VGGGSNA G+F++F+  ++
Sbjct:  187 SAVGPYPYPKMVMHFQSIIGKECKMQ-LQKLNKKVDYIIAAVGGGSNAAGIFYDFIKDEN 245          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_LEPIC3.404e-1153.57Tryptophan synthase beta chain OS=Leptospira inter... [more]
TRPB_PARD85.806e-1155.00Tryptophan synthase beta chain OS=Parabacteroides ... [more]
TRPB_CHLTR7.582e-1153.57Tryptophan synthase beta chain OS=Chlamydia tracho... [more]
TRPB_BLOFL7.582e-1150.00Tryptophan synthase beta chain OS=Blochmannia flor... [more]
TRPB_CAMJR9.903e-1150.00Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJJ9.903e-1150.00Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJE9.903e-1150.00Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJD9.903e-1150.00Tryptophan synthase beta chain OS=Campylobacter je... [more]
TRPB_CAMJ89.903e-1150.00Tryptophan synthase beta chain OS=Campylobacter je... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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