EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPS (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisB5) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.364e-18
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF  VIG+E R Q LE  G  PD LIAC+GGGSNAMGLFH F+
Sbjct:  201 TVAGPHPYPMMVRDFQEVIGQEVREQILETEGRLPDSLIACIGGGSNAMGLFHPFL 256          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METLZ (Tryptophan synthase beta chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.364e-18
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            SV GPHP+PM+VRDF +VIG+ETRRQ LEK G  PD L+ACVGGGSNA+G+F+  +  D
Sbjct:  189 SVVGPHPFPMIVRDFQSVIGEETRRQCLEKEGRLPDTLVACVGGGSNAIGMFYPMLNDD 247          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            +VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+  +
Sbjct:  203 TVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDE 261          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPT (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF AVIG+E R Q ++  G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  201 TVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFL 256          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOPA (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris GN=trpB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF AVIG+E R Q ++  G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  201 TVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFL 256          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  198 TVAGPHPYPAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKS 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_METAC (Tryptophan synthase beta chain 1 OS=Methanosarcina acetivorans GN=trpB1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.092e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHPYPM+VRDF +VIGKE + QA+EK G  PD +IAC GGGSNAMG FH F+
Sbjct:  196 SVVGPHPYPMIVRDFQSVIGKEVKEQAMEKEGRLPDSIIACAGGGSNAMGTFHPFI 251          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_STRCO (Tryptophan synthase beta chain OS=Streptomyces coelicolor GN=trpB PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  IACVGGGSNA+GLFH F+
Sbjct:  203 TVAGPHPFPAMVRDFHRVIGVEARRQLLEQAGRLPDAAIACVGGGSNAIGLFHAFI 258          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHP+P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+
Sbjct:  203 TVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFI 258          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.863e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F+   S
Sbjct:  200 TVAGPHPYPAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKS 259          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_RHOPS8.364e-1873.21Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_METLZ8.364e-1866.10Tryptophan synthase beta chain OS=Methanocorpuscul... [more]
TRPB_STRGG1.092e-1766.10Tryptophan synthase beta chain OS=Streptomyces gri... [more]
TRPB_RHOPT1.092e-1769.64Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_RHOPA1.092e-1769.64Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_PSEF51.092e-1768.33Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB1_METAC1.092e-1769.64Tryptophan synthase beta chain 1 OS=Methanosarcina... [more]
TRPB_STRCO1.427e-1771.43Tryptophan synthase beta chain OS=Streptomyces coe... [more]
TRPB_STRAW1.427e-1769.64Tryptophan synthase beta chain OS=Streptomyces ave... [more]
TRPB_PSESY1.863e-1768.33Tryptophan synthase beta chain OS=Pseudomonas syri... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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