EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPH (Tryptophan synthase beta chain OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.178e-17
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IG E R Q +EK G  PD L+ACVGGGSNA+GLF+ F+   S
Sbjct:  195 TVAGPHPYPQMVRDFQAIIGVEARAQHMEKTGHLPDALVACVGGGSNAIGLFYPFLNDQS 254          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPC (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Corby) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.178e-17
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IG E R Q +EK G  PD L+ACVGGGSNA+GLF+ F+   S
Sbjct:  195 TVAGPHPYPQMVRDFQAIIGVEARAQHMEKTGRLPDALVACVGGGSNAIGLFYPFLNDQS 254          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LEGPA (Tryptophan synthase beta chain OS=Legionella pneumophila (strain Paris) GN=trpB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.178e-17
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGPHPYP MVRDF A+IG E R Q +EK G  PD L+ACVGGGSNA+GLF+ F+   S
Sbjct:  195 TVAGPHPYPQMVRDFQAIIGVEARAQHMEKTGRLPDALVACVGGGSNAIGLFYPFLNDQS 254          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOP5 (Tryptophan synthase beta chain OS=Rhodopseudomonas palustris (strain BisA53) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.151e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF +VIG E R Q ++  G  PD LIAC+GGGSNAMGLFH F+
Sbjct:  201 TVAGPHPYPMMVRDFQSVIGHEVREQIMQLEGRLPDSLIACIGGGSNAMGLFHPFL 256          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METRJ (Tryptophan synthase beta chain OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.151e-17
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF +VIG+ETR Q + + G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  209 TVAGPHPYPAMVRDFQSVIGRETREQMIAQEGRIPDSLVACIGGGSNAMGLFHPFL 264          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_AQUAE (Tryptophan synthase beta chain 1 OS=Aquifex aeolicus GN=trpB1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.151e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHP+PM+VRDF +VIG+ET+ Q L+K G  PD ++ACVGGGSNAMG+F+ FV
Sbjct:  193 SVVGPHPFPMIVRDFQSVIGRETKEQILQKEGRLPDAIVACVGGGSNAMGIFYPFV 248          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_VESOH (Tryptophan synthase beta chain OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=trpB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.421e-17
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            ++AGPHPYPMMVRDF ++IGKE + Q  ++ GG PD L+ACVGGGSNA+GLF+ F+
Sbjct:  195 TIAGPHPYPMMVRDFQSIIGKEAKAQFHDQVGGLPDALVACVGGGSNAIGLFYAFI 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_METMA (Tryptophan synthase beta chain 1 OS=Methanosarcina mazei GN=trpB1 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.080e-17
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHPYPM+VRDF +VIG+E + QA+EK G  PD +IAC GGGSNAMG F+ F+
Sbjct:  196 SVVGPHPYPMIVRDFQSVIGREVKEQAMEKEGRLPDTIIACAGGGSNAMGTFYPFI 251          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.247e-17
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHPYP MVRDF  VIG ET+ Q LEK G  PD ++ACVGGGSNAMG+F+ F+
Sbjct:  187 SVVGPHPYPTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFI 242          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_OLICO (Tryptophan synthase beta chain OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.247e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            +VAGPHPYP MVRDF +VIG ETR Q +   G  PD L+AC+GGGSNAMGLFH F+ +
Sbjct:  201 TVAGPHPYPAMVRDFQSVIGHETREQMMAAEGRLPDSLVACIGGGSNAMGLFHPFLDE 258          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_LEGPH3.178e-1765.00Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_LEGPC3.178e-1765.00Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_LEGPA3.178e-1765.00Tryptophan synthase beta chain OS=Legionella pneum... [more]
TRPB_RHOP54.151e-1769.64Tryptophan synthase beta chain OS=Rhodopseudomonas... [more]
TRPB_METRJ4.151e-1767.86Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB1_AQUAE4.151e-1766.07Tryptophan synthase beta chain 1 OS=Aquifex aeolic... [more]
TRPB_VESOH5.421e-1764.29Tryptophan synthase beta chain OS=Vesicomyosocius ... [more]
TRPB1_METMA7.080e-1766.07Tryptophan synthase beta chain 1 OS=Methanosarcina... [more]
TRPB_THETN9.247e-1767.86Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_OLICO9.247e-1765.52Tryptophan synthase beta chain OS=Oligotropha carb... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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