EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.247e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            SV GPHP+P +VRDF AVIG+ETR Q LEK G  P+ ++ACVGGGSNA+G+FH F+  +
Sbjct:  195 SVLGPHPFPEIVRDFQAVIGQETRTQILEKEGKLPEAIVACVGGGSNAIGMFHPFIDDE 253          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_BEII9 (Tryptophan synthase beta chain OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=trpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.247e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            + AGPHPYP MVRDF  VIG+ETR Q LE+ G  PD L AC+GGGSNA+GLFH F+ +
Sbjct:  211 TAAGPHPYPAMVRDFQCVIGEETRTQMLEREGRLPDSLFACIGGGSNAIGLFHPFLDE 268          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_OCEIH (Tryptophan synthase beta chain OS=Oceanobacillus iheyensis GN=trpB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 35/56 (62.50%), Postives = 47/56 (83.93%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHP+P +VRDF +VIGKET+ Q+++K G  PD ++ACVGGGSNAMG+F+ F+
Sbjct:  195 SVVGPHPFPKIVRDFQSVIGKETKEQSMKKIGSLPDAVVACVGGGSNAMGMFYPFI 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METNO (Tryptophan synthase beta chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF AVIG+ET+ Q L   G  P+ L+AC+GGGSNAMGLFH F+
Sbjct:  202 TVAGPHPYPAMVRDFQAVIGRETKEQMLALEGRLPNSLVACIGGGSNAMGLFHPFL 257          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF A+IG+E   Q  E +G +PD LIACVGGGSNA+GLF+ ++
Sbjct:  195 TVAGPHPYPMMVRDFQAIIGREAITQMQEDYGRQPDALIACVGGGSNAIGLFYPYL 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METFK (Tryptophan synthase beta chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=trpB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYPMMVRDF AVIG E ++Q  E  G +PD +IACVGGGSNAMG+F+ ++
Sbjct:  195 TVAGPHPYPMMVRDFQAVIGTEAKQQMQELIGRQPDAVIACVGGGSNAMGIFYPYI 250          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF 178
            SV GPHPYPMMVRDF +VIG+E +RQ+LE +G  PD LIA VGGGSNA+GLF  F
Sbjct:  212 SVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPF 266          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_THET2 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF 178
            SV GPHPYPMMVRDF +VIG+E +RQ+LE +G  PD LIA VGGGSNA+GLF  F
Sbjct:  198 SVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPF 252          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_METPB (Tryptophan synthase beta chain OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP MVRDF +VIG ET++Q L   G  PD L+AC+GGGSNAMGLFH F+
Sbjct:  209 TVAGPHPYPAMVRDFQSVIGIETKQQMLALEGRLPDSLVACIGGGSNAMGLFHPFL 264          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LACLS (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SV GPHP+P +VRD+ AVIG+E R Q LEK    PD L+ACVGGGSN+MGLF+ FV  +S
Sbjct:  194 SVLGPHPFPQIVRDYQAVIGQEARAQFLEKENKLPDALVACVGGGSNSMGLFYPFVNDES 253          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_EXIS29.247e-1762.71Tryptophan synthase beta chain OS=Exiguobacterium ... [more]
TRPB_BEII99.247e-1765.52Tryptophan synthase beta chain OS=Beijerinckia ind... [more]
TRPB_OCEIH1.208e-1662.50Tryptophan synthase beta chain OS=Oceanobacillus i... [more]
TRPB_METNO1.577e-1667.86Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_NITMU2.060e-1666.07Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_METFK2.060e-1666.07Tryptophan synthase beta chain OS=Methylobacillus ... [more]
TRPB_THET82.691e-1670.91Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_THET22.691e-1670.91Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_METPB2.691e-1667.86Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_LACLS2.691e-1663.33Tryptophan synthase beta chain OS=Lactococcus lact... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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