EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_LACLA (Tryptophan synthase beta chain OS=Lactococcus lactis subsp. lactis GN=trpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SV GPHP+P +VRD+ AVIG+E R Q LEK    PD L+ACVGGGSN+MGLF+ FV  +S
Sbjct:  194 SVLGPHPFPQIVRDYQAVIGQEARAQFLEKENKLPDALVACVGGGSNSMGLFYPFVNDES 253          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP +VRDF ++IG+E RRQ  E+ G  PD L+ACVGGGSNA+GLF+ F+
Sbjct:  196 TVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFL 251          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGPHPYP +VRDF ++IG+E RRQ  E+ G  PD L+ACVGGGSNA+GLF+ F+
Sbjct:  196 TVAGPHPYPQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFL 251          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRFU (Tryptophan synthase beta chain 1 OS=Pyrococcus furiosus GN=trpB1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.691e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SV GPHPYP +VRDF +VIG+E + Q LE  G  PDV++ACVGGGSNAMG+F+ FV
Sbjct:  185 SVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_XYLFT (Tryptophan synthase beta chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGP PYP MVRDF+A++G+E R Q +E +G  PD + ACVGGGSNA+GLFH F+   S
Sbjct:  201 TVAGPDPYPRMVRDFNAIVGREARAQMIEDYGRLPDAMTACVGGGSNAIGLFHAFLNDAS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_XYLFM (Tryptophan synthase beta chain OS=Xylella fastidiosa (strain M12) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGP PYP MVRDF+A++G+E R Q +E +G  PD + ACVGGGSNA+GLFH F+   S
Sbjct:  201 TVAGPDPYPRMVRDFNAIVGREARAQMIEDYGRLPDAMTACVGGGSNAIGLFHAFLNDAS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_XYLFA (Tryptophan synthase beta chain OS=Xylella fastidiosa GN=trpB PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGP PYP MVRDF+A++G+E R Q +E +G  PD + ACVGGGSNA+GLFH F+   S
Sbjct:  201 TVAGPDPYPRMVRDFNAIVGREARAQMIEDYGRLPDAMTACVGGGSNAIGLFHAFLNDAS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_XYLF2 (Tryptophan synthase beta chain OS=Xylella fastidiosa (strain M23) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            +VAGP PYP MVRDF+A++G+E R Q +E +G  PD + ACVGGGSNA+GLFH F+   S
Sbjct:  201 TVAGPDPYPRMVRDFNAIVGREARAQMIEDYGRLPDAMTACVGGGSNAIGLFHAFLNDAS 260          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_XANOM (Tryptophan synthase beta chain OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            +VAGP PYP MVRDF+A++G+E+R Q LE +G  PD + ACVGGGSNA+GLFH F+
Sbjct:  201 TVAGPDPYPRMVRDFNAIVGRESRAQMLEDYGRLPDAISACVGGGSNAIGLFHAFL 256          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_RHOBA (Tryptophan synthase beta chain OS=Rhodopirellula baltica GN=trpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.514e-16
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQD 190
            SV GPHP+PMMVRDF +VIG+ETR Q  + +G  PD ++ACVGGGSNA G+F+ FV  +
Sbjct:  203 SVIGPHPFPMMVRDFQSVIGRETREQCRDTFGRLPDCVVACVGGGSNAAGMFYPFVEDE 261          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB_LACLA2.691e-1663.33Tryptophan synthase beta chain OS=Lactococcus lact... [more]
TRPB_ACICA2.691e-1664.29Tryptophan synthase beta chain OS=Acinetobacter ca... [more]
TRPB_ACIAD2.691e-1664.29Tryptophan synthase beta chain OS=Acinetobacter sp... [more]
TRPB1_PYRFU2.691e-1666.07Tryptophan synthase beta chain 1 OS=Pyrococcus fur... [more]
TRPB_XYLFT3.514e-1660.00Tryptophan synthase beta chain OS=Xylella fastidio... [more]
TRPB_XYLFM3.514e-1660.00Tryptophan synthase beta chain OS=Xylella fastidio... [more]
TRPB_XYLFA3.514e-1660.00Tryptophan synthase beta chain OS=Xylella fastidio... [more]
TRPB_XYLF23.514e-1660.00Tryptophan synthase beta chain OS=Xylella fastidio... [more]
TRPB_XANOM3.514e-1664.29Tryptophan synthase beta chain OS=Xanthomonas oryz... [more]
TRPB_RHOBA3.514e-1661.02Tryptophan synthase beta chain OS=Rhodopirellula b... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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