EL492431

Overview
NameEL492431
Unique NameEL492431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.436e-11
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   16 VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTF
Sbjct:   93 VDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTF 137          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.436e-11
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ F
Sbjct:   95 KVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHF 140          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.793e-11
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   22 QATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK F
Sbjct:   87 QSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFF 129          
The following BLAST results are available for this feature:
BLAST of EL492431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SKP1_SCHPO4.436e-1166.67Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK3_ARATH4.436e-1165.22SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK10_ARATH5.793e-1174.42SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC0270 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0270, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492431 ID=EL492431; Name=EL492431; organism=Citrus sinensis; type=EST; length=157bp
CACTGACTTCGTCAAGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGC
TGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTG
TTGCTGACATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTC
TGGGACC
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