EL492425

Overview
NameEL492425
Unique NameEL492425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:272..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.637e-32
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPY+E+ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK F+ Y+KR+IK LT KL  E  + F
Sbjct:   11 DELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.671e-32
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DEL SDSF Y E+ NG+LWEV+GKWVVQGAVDV+IGANPS               KVVDIVDTFRLQEQP+FDKK FV YMK++IK LTPKL  E++E+F
Sbjct:   11 DELPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDIVDTFRLQEQPSFDKKQFVAYMKKYIKNLTPKLGAEQEEVF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.671e-32
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKEIENG++WEVEGKWVV+GAVDVDIGANPS               KVVDIVDTFRLQEQP+ DKK F++ +K++IK LTP L  E+QE F
Sbjct:   11 DELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.002e-31
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPY+E+ENG+LWEV+G WVVQGAVDVDIGANPS               KVVDIVDTFRLQEQPAFDKK F+++MKR+IK L+ KL  +  ++F
Sbjct:   11 DELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVF 110          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.308e-31
Identity = 70/100 (70.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSFPYKE+ NG+LWEVEGKWVVQGAVDVDIGANPS               KVVDIVDTFRLQEQP FDKK F+ ++KR+IK L  KLSEERQ  F
Sbjct:   11 DELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPS-AEGGDEEGVKIRLVKVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEF 109          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.308e-31
Identity = 68/100 (68.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDS+PYKEIENG+LWEVEGKWVV+GAVDV+IGANPS               KVVDIVD FRLQEQP FDKK F+ ++K++IKLLTPKL  E+QE F
Sbjct:   11 DELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPS-AEGGEDEGVDDTAVKVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHF 109          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.232e-31
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDS+PYKEIENG+LWEVEGKWV +G V+VDIGAN S               KVVDIVD FRLQEQPAFDKK F+ ++KR+IKLLTPKL  E+QE+F
Sbjct:   11 DELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANAS-AEGGEDEGVDDTAVKVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELF 109          
BLAST of EL492425 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.563e-29
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:    5 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIF 304
            DELLSDSF YKE+ENG+LWEVEGKWV QG VDVDIGANPS               KVVDIVDTFRLQEQP FDKK FV+Y+K++IK LT  L  E+ + F
Sbjct:   11 DELLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPS-AEGGEDESVDDTAVKVVDIVDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEF 109          
The following BLAST results are available for this feature:
BLAST of EL492425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_HORVU2.637e-3267.00Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC7.671e-3266.00Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME7.671e-3267.00Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT1.002e-3165.00Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ1.308e-3170.00Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA1.308e-3168.00Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA2.232e-3167.00Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE3.563e-2965.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC0200 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0200, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492425 ID=EL492425; Name=EL492425; organism=Citrus sinensis; type=EST; length=309bp
CCGTGATGAGCTTCTCTCCGATTCTTTTCCCTACAAGGAAATTGAGAATG
GGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGTTGAT
GTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGG
TGTTGATGACCAAGCCGTGAAGGTGGTNGACATTGTCGACACATTCAGGC
TACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAG
AGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGAT
ATTTACTAG
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